Author

Tomás Carrasco-Valenzuela

Berlin Center for Genomics in Biodiversity ResearchORCID 0000-0003-1850-5376Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 2 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:benchmarking· 2 Research Focus:cell type annotation· 2 Research Focus:database / resource· 2 Approach:statistical model· 2 Assay:whole-genome sequencing· 2 Organism:Arabidopsis· 1 Assay:DNA methylation· 1

Frequent Co-Authors

Alexander SuhiD· 2 shared Camila Junqueira MazzoniiD· 2 shared Abdullah Yusuf· 1 shared Agostinho AntunesiD· 1 shared Alan F. ScottiD· 1 shared Alan TraceyiD· 1 shared Alana M. AlexanderiD· 1 shared Alba MarinoiD· 1 shared

Activity by Year

2023-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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2 shared papersEvolutionary Biology

Alexander SuhORCID

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3 papers

Recent·Most cited

GenomicsbioRxivPreprintJan 10, 2025

Manual versus automatic annotation of transposable elements: case studies in Drosophila melanogaster and Aedes albopictus, balancing accuracy and biological relevance

Tomás Carrasco-Valenzuela, Alba Marino, Jessica M. Storer…·Anna-Sophie Fiston-Lavier

This study compares manual and automated methods for transposable element annotation in Drosophila melanogaster and Aedes albopictus, finding that automated methods identify more TEs but manual curation provides more detailed classifications.

2 citations

DrosophilaArabidopsis

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Evolutionary BiologyMobile DNAPeer-reviewedMay 6, 2024

Teaching transposon classification as a means to crowd source the curation of repeat annotation - a tardigrade perspective

Valentina Peona, Jacopo Martelossi, Dareen Almojil…·Alexander Suh

The paper presents a crowd-sourcing approach to manually curate and classify transposable elements (TEs) from tardigrade genomes, resulting in the discovery of hundreds of new TEs.

18 citations

non-human primateexperimental assay

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GenomicsProceedings of the National Academy of SciencesPeer-reviewedFeb 7, 2023

Differential sensory and immune gene evolution in sea turtles with contrasting demographic and life histories

Blair P. Bentley, Tomás Carrasco-Valenzuela, Elisa K. S. Ramos…·Lisa M. Komoroske

The paper analyzes genomes of leatherback and green turtles to identify gene family expansions and demographic differences that may influence their ecological adaptations and conservation status.

56 citationstop 1%

whole-genome sequencingstatistical model

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