Author

Scott A. Oakes

University of ChicagoORCID 0000-0003-2099-2249Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Cell Biology· 1 Genomics· 1 Molecular Biology· 1

Signature Assays, Organisms & Methods

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Organism:human· 3 Research Focus:differential expression· 2 Approach:experimental assay· 2 Assay:proteomics· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1

Frequent Co-Authors

Abinaya RavisankariD· 1 shared Adrienne E.D. StormoiD· 1 shared Advaita Chakraborty· 1 shared Annie OF HinikeriD· 1 shared Bobbie‐Jo Webb‐RobertsoniD· 1 shared Cara M. AndersoniD· 1 shared Carson BaleniD· 1 shared Charanya MuralidharaniD· 1 shared

Activity by Year

2022-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 21 mutual co-author links

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1 shared paperMolecular Biology

Abinaya RavisankarORCID

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3 papers

Recent·Most cited

GenomicsNature GeneticsPeer-reviewedJan 1, 2025

Dissecting tumor transcriptional heterogeneity from single-cell RNA-seq data by generalized binary covariance decomposition

Yusha Liu, Peter S. Carbonetto, Jason Willwerscheid…·Matthew Stephens

This paper introduces GBCD to decompose tumor transcriptional heterogeneity in scRNA-seq data, identifying a new prognostic gene expression program in pancreatic cancer.

18 citationstop 3%

humanscRNA-seq

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Cell BiologyJournal of Clinical InvestigationPeer-reviewedJun 18, 2024

Inhibition of the Eukaryotic Initiation Factor-2-α Kinase PERK Decreases Risk of Autoimmune Diabetes in Mice

Charanya Muralidharan, Fei Huang, Jacob R. Enriquez…·Raghavendra G. Mirmira

This study shows that inhibiting PERK reduces autoimmune diabetes risk in mice by decreasing β cell immunogenicity and improving islet function.

22 citationstop 4%

mousehuman

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Molecular BiologyThe Journal of Cell BiologyPeer-reviewedJan 5, 2022

The E3 ligase TRIM1 ubiquitinates LRRK2 and controls its localization, degradation, and toxicity

Adrienne E.D. Stormo, Farbod Shavarebi, Molly FitzGibbon…·Annie OF Hiniker

This study identifies TRIM1 as an E3 ligase that ubiquitinates LRRK2, regulating its localization, degradation, and toxicity in Parkinson's Disease.

20 citations

humanproteomics

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