Author

Benjamin Woodhams

European Bioinformatics InstituteORCID 0000-0003-2801-5733Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 2 Organism:human· 2 Assay:scRNA-seq· 2 Assay:spatial transcriptomics· 2 Research Focus:cell-cell communication· 1 Research Focus:clustering· 1 Approach:deep learning· 1 Research Focus:differential expression· 1

Frequent Co-Authors

Kenny RobertsiD· 2 shared Omer Ali BayraktariD· 2 shared Sarah Amalia TeichmanniD· 2 shared Tong LiiD· 2 shared Aleksandra TarkowskaiD· 1 shared Alexander Aivazidis· 1 shared Alik HuseynoviD· 1 shared Andrew J. FilbyiD· 1 shared

Activity by Year

2021-2025 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersPathology

Kenny RobertsORCID

Mutual co-authors in cluster

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2 papers

Recent·Most cited

PathologyNature CommunicationsPeer-reviewedMar 10, 2025

Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19

Jimmy Tsz Hang Lee, Sam N. Barnett, Kenny Roberts…·Omer Ali Bayraktar

This study integrates single-cell and spatial transcriptomics with histopathology to identify cellular and molecular changes in lung alveolar damage during COVID-19 progression.

21 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky

GenomicsNature GeneticsPeer-reviewedDec 1, 2021

Mapping the temporal and spatial dynamics of the human endometrium in vivo and in vitro

Luz García‐Alonso, Louis‐François Handfield, Kenny Roberts…·Roser Vento‐Tormo

This study maps the temporal and spatial dynamics of the human endometrium using single-cell and spatial reference maps, identifying key signaling pathways regulating cell fate in vivo and in vitro.

662 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky