Author

Alik Huseynov

German Cancer Research CenterORCID 0000-0002-1438-4389Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1 Pathology· 1

Signature Assays, Organisms & Methods

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Assay:spatial transcriptomics· 3 Research Focus:cell type annotation· 2 Organism:human· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Research Focus:cell-cell communication· 1 Research Focus:database / resource· 1

Frequent Co-Authors

Alexander Aivazidis· 1 shared Andrew J. FilbyiD· 1 shared Andrew John FisheriD· 1 shared ANNA MARIA RANDIiD· 1 shared Anne RademacheriD· 1 shared Antonio M. A. MirandaiD· 1 shared Benjamin WoodhamsiD· 1 shared Brian P. HanleyiD· 1 shared

Activity by Year

2025-2025 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPathology

Alexander Aivazidis

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3 papers

Recent·Most cited

GenomicsGenome biologyPeer-reviewedJun 20, 2025

Comparison of spatial transcriptomics technologies used for tumor cryosections

Anne Rademacher, Alik Huseynov, Michele Bortolomeazzi…·Karsten Rippe

This study compares four spatial transcriptomics technologies for analyzing medulloblastoma cryosections, highlighting their strengths and providing guidance for method selection.

36 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

PathologyNature CommunicationsPeer-reviewedMar 10, 2025

Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19

Jimmy Tsz Hang Lee, Sam N. Barnett, Kenny Roberts…·Omer Ali Bayraktar

This study integrates single-cell and spatial transcriptomics with histopathology to identify cellular and molecular changes in lung alveolar damage during COVID-19 progression.

21 citationstop 1%

humanscRNA-seq

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BioinformaticsbioRxivPreprintFeb 24, 2025

Geospatially informed representation of spatial genomics data with SpatialFeatureExperiment

Lambda Moses, Alik Huseynov, Joseph Matthew Rich, Lior S. Pachter

SpatialFeatureExperiment provides a Bioconductor package for handling spatial-omics data, integrating spatial analysis with single-cell omics workflows.

2 citations

spatial transcriptomicsexperimental assay

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