Author

Andrew John Fisher

Freeman HospitalORCID 0000-0003-4822-7223Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

Click to filter author papers

Bioinformatics· 1 Cell Biology· 1 Pathology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:human· 3 Research Focus:cell type annotation· 2 Approach:statistical model· 2 Approach:benchmark study· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1

Frequent Co-Authors

Andrew J. FilbyiD· 2 shared Joaquim Majo· 2 shared Luke MilrossiD· 2 shared Alexander Aivazidis· 1 shared Alik HuseynoviD· 1 shared Amanda ThomsoniD· 1 shared Andrew Fuller· 1 shared ANNA MARIA RANDIiD· 1 shared

Activity by Year

2023-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 28 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPathology

Andrew J. FilbyORCID

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Cell BiologyEuropean Respiratory JournalPeer-reviewedDec 11, 2025

Extracellular Matrix-Induced Genes May Reduce Response to Rapamycin in LAM

Debbie Clements, Roya Babaei‐Jadidi, Jan Johnson…·Simon R. Johnson

This study identifies extracellular matrix genes that reduce rapamycin response in LAM cells and suggests repurposed inhibitors as potential therapies.

6 citationstop 4%

humanproteomics

𝕏 PostBluesky

PathologyNature CommunicationsPeer-reviewedMar 10, 2025

Integrated histopathology, spatial and single cell transcriptomics resolve cellular drivers of early and late alveolar damage in COVID-19

Jimmy Tsz Hang Lee, Sam N. Barnett, Kenny Roberts…·Omer Ali Bayraktar

This study integrates single-cell and spatial transcriptomics with histopathology to identify cellular and molecular changes in lung alveolar damage during COVID-19 progression.

21 citationstop 1%

humanscRNA-seq

𝕏 PostBluesky

BioinformaticsCytometry Part APeer-reviewedSep 26, 2023

OPTIMAL: An OPTimsed Imaging Mass cytometry AnaLysis framework for benchmarking segmentation and data exploration

Bethany Hunter, Ioana Nicorescu, Emma Foster…·George Merces

OPTIMAL benchmarks segmentation and analysis methods for Imaging Mass Cytometry data, identifying optimal parameters for cell type identification and spatial analysis.

21 citations

humanimaging

𝕏 PostBluesky