Author

Shun Yamanouchi

The University of TokyoORCID 0009-0001-0017-4006Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 1 Bioinformatics· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Organism:E. coli· 1 Research Focus:ecology & biodiversity· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1 Assay:metagenomics· 1 Assay:protein sequence· 1

Frequent Co-Authors

Wataru IwasakiiD· 3 shared Aifang ChengiD· 1 shared Cheng ZhongiD· 1 shared Eri UemuraiD· 1 shared Hideki TaguchiiD· 1 shared Hongbin LiuiD· 1 shared Jiawei CheniD· 1 shared Kohei YamasakiiD· 1 shared

Activity by Year

2024-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 27 mutual co-author links

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3 shared papersBioinformatics

Wataru IwasakiORCID

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3 papers

Recent·Most cited

BioinformaticsbioRxivPreprintDec 2, 2024

CoLaML: Inferring latent evolutionary modes from heterogeneous gene content

Shun Yamanouchi, Tsukasa Fukunaga, Wataru Iwasaki

CoLaML infers latent evolutionary modes from gene content heterogeneity across clades and gene families, outperforming previous models in fitting empirical datasets.

1 citation

statistical modelgene regulatory network inference

𝕏 PostBluesky

MicrobiologymSystemsPeer-reviewedOct 15, 2024

Marine biofilms: cyanobacteria factories for the global oceans

Cheng Zhong, Shun Yamanouchi, Yingdong Li…·Pei‐Yuan Qian

This study reveals marine biofilms as a major habitat for cyanobacteria, showing distinct diversity and functional adaptations compared to seawater, with diversification linked to key geological events.

6 citations

metagenomicsstatistical model

𝕏 PostBluesky

BiochemistryNucleic Acids ResearchPeer-reviewedApr 10, 2024

The ABCF proteins in Escherichia coli individually alleviate nascent peptide-induced noncanonical translations.

Yuhei Chadani, Shun Yamanouchi, Eri Uemura…·Hideki Taguchi

This study identifies how ABCF proteins in E. coli alleviate noncanonical translations caused by specific nascent peptide sequences.

34 citationstop 5%

E. coliprotein sequence

𝕏 PostBluesky