Author

Ayam Gupta

Indian Institute of Technology MadrasORCID 0009-0002-3608-0439Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Genomics· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Research Focus:differential expression· 1 Approach:experimental assay· 1 Organism:human· 1 Research Focus:variant calling· 1

Frequent Co-Authors

Ashwani KumariD· 1 shared Himanshu SinhaiD· 1 shared Karthik RamaniD· 1 shared Manikandan NarayananiD· 1 shared Prashanth SuravajhalaiD· 1 shared Sonal GuptaiD· 1 shared Suresh Kumar Jatawa· 1 shared Venkatesh KamarajiD· 1 shared

Activity by Year

2019-2025 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 12 mutual co-author links

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1 shared paperBioinformatics

Ashwani KumarORCID

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2 papers

Recent·Most cited

GenomicsNAR Genomics and BioinformaticsPeer-reviewedJul 4, 2025

GViNC: an innovative framework for genome graph comparison reveals hidden patterns in the genetic diversity of human populations

Venkatesh Kamaraj, Ayam Gupta, Karthik Raman…·Himanshu Sinha

GViNC compares genome graphs to reveal ancestry-specific genetic diversity patterns and key variant regions in human populations.

1 citation

humanwhole-genome sequencing

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BioinformaticsbioRxivPreprintNov 9, 2019

A Simplest Bioinformatics Pipeline for Whole Transcriptome Sequencing: Overview of the Processing and Steps from Raw Data to Downstream Analysis.

Ayam Gupta, Sonal Gupta, Suresh Kumar Jatawa…·Prashanth Suravajhala

The paper benchmarks the cufflinks-cuffdiff pipeline for RNA-Seq analysis and provides a protocol for whole transcriptome shotgun sequencing and downstream analysis.

3 citations

bulk RNA-seqstatistical model

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