Author

Yaowen Ye

Nanjing Tech UniversityORCID 0009-0002-4267-9237Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Research Focus:benchmarking· 2 Research Focus:drug response / drug discovery· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Approach:graph neural network· 1 Approach:machine learning (classical)· 1

Frequent Co-Authors

Dengming MingiD· 1 shared Jiayi GaoiD· 1 shared Ting Su· 1 shared

Activity by Year

2025-2026 · peak 1/yr

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3 top collaborators · 3 mutual co-author links

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1 shared paperBioinformatics

Dengming MingORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintMay 7, 2026

immuneKG: An Immune-Cell-Aware Knowledge Graph Framework for Target Discovery in Immune-Mediated Diseases

Yaowen Ye

The paper introduces immuneKG, a knowledge graph framework for immune-mediated diseases, achieving high performance in target discovery using a graph neural network and novel features.

DOI 10.64898/2026.04.30.721823

humangraph neural network

𝕏 PostBluesky

BioinformaticsInternational Journal of Molecular SciencesPeer-reviewedSep 16, 2025

SenolyticSynergy: An Attention-Based Network for Discovering Novel Senolytic Combinations via Human Aging Genomics

Yaowen Ye, Ting Su, Jiayi Gao, Dengming Ming

This paper introduces SenolyticSynergy, a model predicting effective senolytic drug combinations using gene expression analysis and machine learning, identifying 10 high-scoring combinations.

DOI 10.3390/ijms26189004

humanbulk RNA-seq

𝕏 PostBluesky