Author

Xueying Tian

University of California, BerkeleyORCID 0009-0002-4501-2710Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Genetics· 2

Signature Assays, Organisms & Methods

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Research Focus:gene regulatory network inference· 2 Assay:bulk RNA-seq· 1 Approach:deep learning· 1 Assay:scRNA-seq· 1 Approach:statistical model· 1 Approach:transformer / foundation model· 1

Frequent Co-Authors

Yue WangiD· 2 shared Yash Patel· 1 shared

Activity by Year

2025-2025 · peak 2/yr

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2 top collaborators · 1 mutual co-author link

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2 shared papersGenetics

Yue WangORCID

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2 papers

Recent·Most cited

GeneticsBulletin of Mathematical BiologyPeer-reviewedOct 22, 2025

QWENDY: Gene Regulatory Network Inference by Quadruple Covariance Matrices

Yue Wang, Xueying Tian

QWENDY infers gene regulatory networks from single-cell gene expression data across four time points, outperforming existing methods on experimental data but not synthetic data.

DOI 10.1007/s11538-025-01542-x

scRNA-seqstatistical model

𝕏 PostBluesky

GeneticsBioinformaticsPeer-reviewedMay 21, 2025

TRENDY: Gene Regulatory Network Inference Enhanced by Transformer

Xueying Tian, Yash Patel, Yue Wang

TRENDY improves gene regulatory network inference by integrating transformer models into the WENDY method, showing better performance on simulated and experimental data.

5 citations

bulk RNA-seqdeep learning

𝕏 PostBluesky