Kincaid Rowbotham

SMAP is a pipeline that matches proteomic and genomic samples using protein-coding variants and discriminant scores, correcting 18.8% of mismatches in a large-scale proteomics dataset.

The paper compares SP1 binding in SV40 chromatin from virions and minichromosomes, finding differences in binding sites due to chromatin structure.

The paper compares FS-Seq to existing methods for nucleosome mapping in SV40 chromatin and finds it produces similar results to ATAC-Seq and ChIP-Seq.