Author

Shuhao Xu

University of California San DiegoORCID 0009-0003-8849-1237Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Bioinformatics· 1 Neuroscience· 1

Signature Assays, Organisms & Methods

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Research Focus:differential expression· 2 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Assay:ChIP-seq· 1 Approach:experimental assay· 1 Organism:human· 1 Assay:metagenomics· 1 Approach:statistical model· 1

Frequent Co-Authors

Gene Wei-Ming YeoiD· 2 shared Benjamin Hoover· 1 shared Brian Yee· 1 shared Dong YangiD· 1 shared Hsuan-Lin HeriD· 1 shared Katherine Rothamel· 1 shared Keegan FlanaganiD· 1 shared Megan Huang· 1 shared

Activity by Year

2025-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 37 mutual co-author links

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2 shared papersBioinformatics

Gene Wei-Ming YeoORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintAug 11, 2026

Flipper: An advanced framework for identifyingdifferential RNA binding behavior with eCLIP data

Keegan Flanagan, Shuhao Xu, Gene Wei-Ming Yeo

Flipper identifies differential RNA binding behavior using eCLIP data with improved normalization and separation of expression/splicing effects from true binding changes.

DOI 10.64898/2026.03.13.711628

ChIP-seqstatistical model

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NeurosciencebioRxivPreprintOct 31, 2025

KIF5A binds RNA to orchestrate synaptic mRNA localization and stress granules in ALS

Phuong Le, Neeraj K. Lal, Shuhao Xu…·Gene Wei-Ming Yeo

This study shows KIF5A binds RNA to regulate synaptic mRNA localization and stress granules, with ALS mutations disrupting synaptic homeostasis.

2 citations

humanmetagenomics

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