Parsa Ghadermazi

The paper compares gut microbiomes of Tsimane and Hadza populations to show that many microbes co-migrated with humans globally, but are now vanishing in industrialized populations.

ZipStrain enables rapid and precise strain-resolved metagenomics by analyzing 2,754 human samples to identify strain-sharing gradients and gene variation.

This study uses MIg-Seq to analyze IgA targeting in infant gut microbiota, finding increased targeting of Bifidobacterium and diet-specific associations with IgA binding.

ADToolbox integrates metagenomics data into an enhanced ADM model to improve prediction of anaerobic digestion dynamics and VFA production.

This paper introduces a reinforcement learning algorithm to model microbial metabolism and evolution, showing improved prediction of stable metabolic strategies in heterogeneous communities.

This study shows red cabbage juice modulates gut microbiota to improve intestinal homeostasis and reduce colitis in mice by enhancing SCFA production and suppressing inflammatory pathways.

kb_DRAM integrates DRAM tools into KBase for microbial and viral genome annotation and metabolic modeling through a user-friendly interface.