Author

Annika Philomin

University of WashingtonORCID 0009-0008-0305-9709Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Biochemistry· 2

Signature Assays, Organisms & Methods

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Approach:deep learning· 2 Research Focus:protein design· 2 Assay:protein structure· 2 Approach:experimental assay· 1

Frequent Co-Authors

David A. BakeriD· 2 shared Abbas IdrisiD· 1 shared Adam J. BroermaniD· 1 shared Alex KangiD· 1 shared Amelie MedeirosiD· 1 shared Andrew J. BorstiD· 1 shared Arvind S. PillaiiD· 1 shared Asim K. BeraiD· 1 shared

Activity by Year

2024-2026 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 25 mutual co-author links

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2 shared papersBiochemistry

David A. BakerORCID

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2 papers

Recent·Most cited

BiochemistrybioRxivPreprintJul 15, 2026

Generative design of programmable asymmetric β-barrel nanopores

Annika Philomin, Ria Sonigra, Sagardip Majumder…·David A. Baker

This paper introduces a generative AI framework for designing transmembrane β-barrel nanopores with customizable properties for ion sensing, DNA translocation, and transport.

DOI 10.64898/2026.06.04.729630

protein structuredeep learning

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BiochemistryNaturePeer-reviewedAug 14, 2024

De novo design of allosterically switchable protein assemblies

Arvind S. Pillai, Abbas Idris, Annika Philomin…·David A. Baker

This paper designs allosterically switchable protein assemblies using rigid-body coupling of effector-switchable modules, demonstrating cooperative ligand binding and structural changes similar to natural systems.

110 citationstop 1%

protein structuredeep learning

𝕏 PostBluesky