Author

Erkmen Erken

Koc UniversityORCID 0009-0009-2564-8122Unclaimed ORCID profile · follow to get notified of new preprints

Biology Disciplines

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Signature Assays, Organisms & Methods

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Approach:statistical model· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:deep learning· 1 Research Focus:differential expression· 1 Research Focus:gene regulatory network inference· 1 Organism:human· 1

Frequent Co-Authors

Fabian Joachim TheisiD· 2 shared Kemal InecikiD· 2 shared Eylul Sevinc SevinciD· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

3 top collaborators · 3 mutual co-author links

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2 shared papersBioinformatics

Fabian Joachim TheisORCID

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2 papers

Recent·Most cited

BioinformaticsbioRxivPreprintNov 13, 2026

Chimera: Cross-Species Single-Cell Generative Modeling of Expression Deployment Relative to Protein Conservation

Kemal Inecik, Eylul Sevinc Sevinc, Erkmen Erken, Fabian Theis

Chimera measures gene expression deployment across species, showing differences between predicted and observed expression patterns, revealing new insights beyond sequence conservation.

DOI 10.64898/2026.11.11.766029

humanmouse

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BioinformaticsbioRxivPreprintFeb 6, 2026

IDTrack: Time- and Namespace-Aware Identifier Harmonization for Reproducible Workflows

Kemal İnecik, Erkmen Erken, Fabian Joachim Theis

IDTrack harmonizes gene identifiers across time and namespaces to ensure reproducibility in computational biology workflows by tracking annotation release history and mapping decisions.

1 citation

statistical modelbenchmarking

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