Author

Minji Kim

Mayo ClinicORCID 0009-0009-6787-0354Unclaimed ORCID profile · follow to get notified of new preprints

Additional preprints under this name without ORCID

Minji Kim2 papers · Dalhousie University

Biology Disciplines

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Cancer Biology· 2 Genomics· 1

Signature Assays, Organisms & Methods

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Research Focus:cell type annotation· 3 Organism:human· 3 Approach:deep learning· 2 Assay:imaging· 2 Research Focus:clustering· 1 Research Focus:differential expression· 1 Research Focus:spatial domain detection· 1 Assay:spatial transcriptomics· 1

Frequent Co-Authors

Inyeop Jang· 3 shared Tae Hyun HwangiD· 3 shared Isabel BarnfatheriD· 2 shared Jean Rene V. ClemenceauiD· 2 shared Jeong Hwan ParkiD· 2 shared Ji‐Youn SungiD· 2 shared Amelia R. Schroeder· 1 shared Baohong ZhangiD· 1 shared

Activity by Year

2024-2025 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

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3 shared papersCancer Biology

Inyeop Jang

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3 papers

Recent·Most cited

GenomicsNature MethodsPeer-reviewedSep 1, 2025

Scaling up spatial transcriptomics for large-sized tissues: uncovering cellular-level tissue architecture beyond conventional platforms with iSCALE

Amelia R. Schroeder, Melanie Loth, Chunyu Luo…·Mingyao Li

iSCALE predicts super-resolution gene expression and annotates tissue architecture in large tissues, revealing features missed by conventional spatial transcriptomics.

31 citationstop 1%

humanspatial transcriptomics

𝕏 PostBluesky

Cancer BiologyNature CommunicationsPeer-reviewedMay 22, 2025

Revealing 3D cancer tissue structures using holotomography and virtual hematoxylin and eosin staining via deep learning

Juyeon Park, Su‐Jin Shin, Geon Kim…·YongKeun Park

This paper develops a 3D virtual H&E staining method using holotomography and deep learning for cancer tissues, validated on colon and gastric cancer samples.

44 citationstop 1%

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Cancer BiologyCommunications MedicinePeer-reviewedOct 3, 2024

Integrative Spatial Analysis of H&E and IHC Images Identifies Prognostic Immune Subtypes Correlated with Progression-Free Survival in HPV-Related Oropharyngeal Squamous Cell Carcinoma

Sumanth Reddy Nakkireddy, Inyeop Jang, Minji Kim…·Tae Hyun Hwang

The paper integrates H&E and IHC images to identify immune subtypes in HPV-related oropharyngeal cancer, finding that immune inflamed subtypes correlate with better progression-free survival.

13 citations

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