KOunt - A reproducible KEGG orthologue abundance workflow

SummaryAccurate gene prediction is essential for successful metagenome analysis. We present KOunt, a Snake-make pipeline, that precisely quantifies KEGG orthologue abundance. Availability and implementationKOunt is available on GitHub: https://github.com/WatsonLab/KOunt. The KOunt reference database is available on figshare: https://figshare.com/s/72fe3ed7dfbbdcd8b1e5. Test data are available at https://figshare.com/ndownloader/files/39545968 and version 1.1.0 of KOunt at https://figshare.com/ndown-loader/files/39547273. Contactjennifer.mattock@roslin.ed.ac.uk Supplementary informationSupplementary data are available at Bioinformatics online.