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BioinformaticsbioRxiv
Preprint

Combiroc: when 'less is more' in bulk and single cell marker signatures.

Ivan FerrariiD, Saveria MazzaraiD, Mariacristina CrostiiD, Sergio AbrignaniiD, Renata GrifantiniiD, Mauro BombaciiD, Riccardo Lorenzo RossiiD

Abstract

Here we present the combiroc R package, for signatures refinement in high throughput omics. Based on a ROC-driven marker selection, it can be used to find powerful smaller sub-signatures from scRNAseq experiments and to annotate cells using fewer markers. Trained on PBMC dataset, combiroc found NK marker combinations with high cell-discriminating power, in agreement with human protein atlas and that were validated both computationally and experimentally on independent datasets.

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02 /Specification & Classification

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