genome assembly

This paper evaluates long-read sequencing for characterizing the OsHV-1 genome from infected M. gigas tissues, showing improved accuracy compared to short-read methods.

This study examines genetic connectivity and adaptation in Ephydatia muelleri across its range using ddRADseq data, finding low connectivity and polygenic adaptation to environmental factors.

The paper analyzes the population genetics of Anopheles funestus in Tanzania, identifying two distinct genetic populations with different resistance backgrounds and suggesting geographic barriers to gene flow.

This paper develops an endogenous CRISPR-Cas9 system for precise genome editing of LGG, enabling functional strain engineering for probiotic applications.

This study sequenced 47 termite genomes, revealing genomic expansions linked to dietary evolution and ecological success in Termitidae.

The paper presents the genome of Pinctada radiata, a Lessepsian migrant, providing insights into its genetic adaptations to environmental changes and supporting conservation efforts.

This study sequences the genome of Saraca asoca and assesses genetic diversity using GBS, identifying SSRs and biosynthesis pathways for flavonoids.

The paper uses genome sequencing to show genetic drift impacts bull and giant kelp populations, with no purging of harmful alleles, and suggests conservation strategies.

The paper evaluates genomic prediction models for 36 traits in Arabidopsis thaliana, finding regression models generally most accurate, with random forest better for biochemical traits.

The paper investigates the role of inversions in shaping genetic diversity and population structure in European sardines, finding they drive adaptive allele frequency differences across populations.

The paper introduces EcoPhylo, a computational workflow to assess genome recovery rates in microbial communities using ribosomal protein phylogeography, applied to human gut and oral cavity data.

The paper develops a method to identify and sequence multiple RNA virus isolates co-infecting a single host plant, demonstrating its effectiveness on rice yellow mottle virus in Burkina Faso.

This paper presents a haplotype-resolved genome assembly for the tetraploid potato cultivar Desiree, along with annotations and epigenetic data, providing a resource for potato research.

The paper presents a chromosome-level reference genome for Phyllidia flava, a Mediterranean nudibranch, to aid conservation and phylogenetic studies.

This study uses ancestral recombination graphs to improve quantitative genetic analysis of rice yield in indica and japonica subspecies, showing better predictive ability when combining both subspecies.

The paper identifies U6 promoters and develops Cas9-expressing plants in Ceratopteris richardii to improve genome editing in ferns.

The paper updates the genome assembly of Samia ricini using long-read technologies and provides functional annotations including gene prediction and piRNA clusters.

This study uses genomic data from 91 individuals in Ukraine to analyze migration patterns from the Bronze Age to the early modern period, revealing complex ancestry changes and continuity.

The paper presents the reference genome of Erebia palarica, enabling studies on speciation, hybridization, and population genetics.

The paper presents the reference genome of the Spanish Moon Moth Graellsia isabellae, which helps resolve its scientific name and supports genetic monitoring of the species.

The paper evaluates methods for predicting inbreeding levels using genomic data in small populations, finding that model-based and rule-based approaches perform well under various conditions.

This study identifies structural variants in wild Caenorhabditis elegans populations using long-read sequencing, revealing their role in phenotypic diversity and adaptation.

The paper reports the draft genome sequence of Delftia tsuruhatensis IICT-RSP4, an uricase-producing soil bacterium, revealing its potential for antimicrobial, anticancer, and antimalarial secondary metabolites.

The paper presents a high-quality phased genome assembly of Urtica dioica using multiple sequencing technologies and a novel Hi-C protocol, revealing structural variation and gene content.

This study identifies chromothripsis and a novel LTA chromothripsis mechanism driving genome complexity and evolution in osteosarcoma, with prognostic implications for high-grade tumors.

The paper presents the first reference genome for the red-fronted brown lemur using portable nanopore sequencing conducted in Madagascar, highlighting its potential for conservation genomics and equitable research practices.

The paper constructs a near-complete genome assembly for the bearded dragon Pogona vitticeps and characterizes the Z sex chromosome, identifying key genes involved in sex determination.