Topic · Artificial Intelligence · Computer Science
Semantic Web and Ontologies
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
6 papers
- BioinformaticsGigaSciencePeer-reviewed
METRIN-KG: A knowledge graph integrating plant metabolites, traits, and biotic interactions
Disha Tandon, Tarcisio Mendes de Farias, Pierre‐Marie Allard, Emmanuel Défossez
The paper introduces METRIN-KG, a knowledge graph integrating plant metabolites, traits, and biotic interactions to facilitate biodiversity data analysis.
1 citation - BioinformaticsGigaSciencePeer-reviewed
Programmatic access to ICTV virus taxonomy through a public ontology API
Philippe Lieutaud, James Alastair McLaughlin, Robert Curtis Hendrickson…·Bruno Coutard
The paper develops a public ontology API for programmatic access to ICTV virus taxonomy, enabling semantic and machine-actionable retrieval of taxonomic data across releases.
DOI 10.1093/gigascience/giag089 - BioinformaticsDatabasePeer-reviewed
Enabling Semantic Queries Across Federated Bioinformatics Databases
Ana Claudia Sima, Tarcisio Mendes de Farias, Erich Zbinden…·Christophe Dessimoz
The paper introduces a semantic model and federated approach to integrate heterogeneous biological databases, enabling joint queries across gene expression, orthology, and protein data sources.
37 citations - BioinformaticsPLoS ONEPeer-reviewed
Agronomic Linked Data (AgroLD): a Knowledge-based System to Enable Integrative Biology in Agronomy
Aravind Venkatesan, Gildas Tagny Ngompé, Nordine El Hassouni…·Pierre Larmande
The paper introduces AgroLD, a knowledge-based system integrating omics data from plant species to enable integrative biology research in agronomy.
28 citations - BioinformaticsBMC BioinformaticsPeer-reviewed
Cross-linking BioThings APIs through JSON-LD to facilitate knowledge exploration
Jiwen Xin, Cyrus Afrasiabi, Sebastien Lelong…·Chunlei Wu
The paper implements JSON-LD on BioThings APIs to enhance interoperability through semantic annotations, enabling cross-linking and improved query capabilities.