Topic · Ecology · Environmental Science
Coral and Marine Ecosystems Studies
OpenAlex topic; a paper is listed when OpenAlex scores it at least 0.5 for this topic.
409 papers
- EcologybioRxivPreprint
Autonomous Reef Monitoring Structures (ARMS) Reveal Human-Induced Biodiversity Shifts in Urban Coastal Ecosystems
Zhongyue Wan, Isis Guibert, Wing Yi Haze Chung…·David Michael Baker
The paper uses ARMS and metabarcoding to show nutrient pollution reduces species richness and restructures marine communities in urban coastal areas.
DOI 10.1101/2025.07.11.664282 - EcologybioRxivPreprint
Habitat suitability modeling growth and cover trends of staghorn coral (Acropora cervicornis) outplants in the lower Florida Keys
Glenna Dyson, Erich Bartels, Easton R. White…·Jennifer A. Dijkstra
This study develops habitat suitability models to predict optimal locations for staghorn coral outplants in the Florida Keys, finding that deeper, less turbulent waters and proximity to reef edges correlate with higher coral cover and growth.
DOI 10.1101/2025.07.11.664295 - EcologyCoral ReefsPeer-reviewed
Excluding Large Grazers Dramatically Improves Survival of Outplanted Juvenile Corals
Eveline van der Steeg, Adriana Humanes, John C. Bythell…·James R. Guest
This study shows that excluding large grazers using deterrents significantly improves survival and growth of outplanted juvenile corals.
14 citationstop 2% - MicrobiologyPLOS ClimatePeer-reviewed
Shifts in Coral Reef Holobiont Communities in the High-CO2 Marine Environment of Iotorishima Island
Roger Huerlimann, Hin Boo Wee, Marizete da Silva Santos…·James Davis Reimer
This study examines shifts in holobiont communities of Palythoa tuberculosa under high-pCO2 conditions at Iotorishima Island, finding reduced Symbiodiniaceae diversity and altered bacterial profiles.
DOI 10.1371/journal.pclm.0000665 - Systems BiologybioRxivPreprint
Establishment of menthol bleaching protocols for six stony coral species
Lavinia Bauer, Erik Francesco Ferrara, Giulia Puntin…·Maren Ziegler
This study tests menthol treatments on six stony coral species to establish effective bleaching protocols, finding varying tolerance levels and optimal treatment durations.
3 citations - EcologyCoral ReefsPeer-reviewed
Caribbean octocoral communities: finding the forest for the trees?
Howard R. Lasker, Lorenzo Bramanti, Peter J. Edmunds…·Katell Guizien
The paper investigates the density thresholds at which octocoral communities in the Caribbean exhibit emergent 'forest' properties by analyzing structural and flow dynamics.
- EcologyGlobal Ecology and BiogeographyPeer-reviewed
Shining a light on daytime coral spawning synchrony across oceans
Charlotte Moritz, Serge Andréfouët, Claire‐Sophie Azam…·Vetea Liao
This study predicts daytime coral spawning times for Porites rus across the Southern Hemisphere using environmental cues and citizen science data.
- EcologyEnvironmental Monitoring and AssessmentPeer-reviewed
Broadscale reconnaissance of coral reefs from citizen science and deep learning
Christopher L. Lawson, Katie Chartrand, Chris Roelfsema…·Peter J. Mumby
This paper demonstrates that combining citizen science with deep learning can produce accurate benthic cover estimates of coral reefs at a large scale.
- EcologyEcology and EvolutionPeer-reviewed
Spawning asynchrony and mixed reproductive strategies in a common mass spawning coral
Gerard F. Ricardo, Christopher Doropoulos, Russell C. Babcock…·Peter J. Mumby
The paper investigates reproductive strategies in Platygyra daedalea, finding high spawning asynchrony, self-fertilization, and genetic subpopulations, suggesting limited cross-fertilization and potential reproductive assurance through selfing.
- EcologybioRxivPreprint
From sediment to coral symbionts: persistent spatial structure across reef microbiomes
Carly B. Scott, Madeleine R. Collins, Emily N. Nixon…·Kristina L. Black
This study compares spatial and temporal dynamics of microbial and Symbiodiniaceae communities in reef sediments and corals, finding persistent spatial structure despite temporal changes in sediments.
DOI 10.1101/2025.06.23.661127 - MicrobiologybioRxivPreprint
Stony coral tissue loss disease (SCTLD) destabilizes the coral microbiome
Shrinivas Nandi, Timothy G. Stephens, Kasey Walsh…·Debashish Bhattacharya
This study investigates microbial and viral community dynamics in SCTLD-affected corals, revealing microbial destabilization and identifying potential beneficial microbiomes in asymptomatic colonies.
- MicrobiologybioRxivPreprint
Evolutionary genomics predicts probiotic persistence in corals
Mei Xie, Nan Xiang, Tianhua Liao…·Haiwei Luo
This paper identifies a probiotic bacterium with persistent colonization in corals using evolutionary genomic markers, showing improved thermal tolerance and survival during bleaching.
4 citations - EcologyScience AdvancesPeer-reviewed
Anthropogenic climate change will likely outpace coral range expansion
N. S. Vogt-Vincent, James M. Pringle, Christopher Edward Cornwall, Lisa C. McManus
The paper models coral range expansion under climate change and finds that range expansion lags behind expected reef decline, highlighting the need for emission reductions.
- Evolutionary BiologyEvolutionary ApplicationsPeer-reviewed
Population genomics for coral reef restoration - a case study of staghorn corals in Micronesia
Dareon C. Rios, Héctor Torrado, S. M. E. Lemer…·David J. Combosch
This study uses population genomics to guide coral reef restoration by analyzing genetic diversity and connectivity in staghorn corals in Micronesia, identifying key populations for conservation and restoration strategies.
- EcologyFunctional EcologyPeer-reviewed
Recovery mode: Marine protected areas enhance the resilience of kelp species from marine heatwaves
Carolina Olguín‐Jacobson, Nur Arafeh‐Dalmau, Michelle María Early‐Capistrán…·Fiorenza Micheli
This study shows marine protected areas enhance recovery of some invertebrate species after marine heatwaves but not others, with benefits depending on species traits.
16 citationstop 2% - EcologybioRxivPreprint
Proximity and current alignment drives fertilisation success in a broadcast-spawning coral
Gerard F. Ricardo, Christopher Doropoulos, Adriana Humanes…·Peter J. Mumby
This study shows that coral fertilization success depends on proximity and current alignment, with reproductive isolation threatening degraded reef populations.
- Molecular BiologybioRxivPreprint
Does local adaptation influence thermal responses in red coral populations across depth gradients? Transcriptomic insights for effective conservation.
Sandra Ramirez‐Calero, Joaquim Garrabou, S. Suresh…·Jean‐Baptiste Ledoux
The paper examines transcriptomic responses to thermal stress in shallow and mesophotic red coral populations, finding distinct gene expression patterns suggesting local adaptation influences thermal resilience.
- EcologybioRxivPreprint
Physiological mechanisms underlying coral acclimatization capacity to novel, multi-stressor conditions
Sarah L. Solomon, Christian R. A. Lippens, Riccardo Mazza…·Verena Schoepf
This study examines how two coral species acclimatize to multi-stressor environments by transplanting them between habitats and measuring physiological traits over time.
- EcologyEnvironmental Science & TechnologyPeer-reviewed
Thermal preconditioning modulates coral physiology and heat tolerance: A multi-species perspective
Erik F. Ferrara, Anna Roik, Franziska Wöhrmann-Zipf, Maren Ziegler
This study assesses how thermal preconditioning affects thermal tolerance and baseline physiology across six coral species, finding species-specific responses and trade-offs in physiological baselines.
11 citationstop 4% - EcologybioRxivPreprint
Differential regulation of apoptosis, autophagy and Symbiodiniaceae energy transfer mediate the link between bleaching and disease in Exaiptasia diaphana
Lauren E. Fuess, Sofia C. Diaz de Villegas, Peyton Y. Abdelbaki
This study investigates how heat stress affects immune responses and nutrient exchange in Exaiptasia diaphana, linking bleaching to increased disease susceptibility.
DOI 10.1101/2025.04.21.649845 - GenomicsbioRxivPreprint
Mosaic accumulation of somatic genetic variation and estimates of age in the long-lived reef-building coral Acropora palmata
Trinity L. Conn, Jessie Renton, Valérie F. Chamberland…·Iliana B. Baums
The paper quantifies somatic genetic variation in corals and estimates their age using mutation rates, finding no positive selection and a neutral framework for studying genetic diversity.
- GenomicsGigabytePeer-reviewed
Genome assembly and annotation of Acropora pulchra from Mo'orea French Polynesia
Trinity L. Conn, Jill Ashey, Ross Cunning, Hollie M. Putnam
The paper presents the genome and DNA methylome assembly of Acropora pulchra from Moorea, French Polynesia, achieving high completeness and providing insights into its genetic and epigenetic features.
- EcologyPLoS Computational BiologyPeer-reviewed
Visualization and quantification of coral reef soundscapes using CoralSoundExplorer software
Lana Minier, Jérémy Rouch, Bamdad Sabbagh…·Rémi Emonet
The paper introduces CoralSoundExplorer, an open-source software tool for analyzing coral reef soundscapes using deep learning, demonstrating its ability to visualize and quantify acoustic changes in different reef environments.
8 citations - GenomicsbioRxivPreprint
Genetic structure of mesophotic and shallow Acropora aculeus on isolated atolls of Eastern Australia
Alejandra Hernández‐Agreda, Jennifer A. Hoey, Dennis van Hulten…·Pim Bongaerts
This study examines the genetic structure of Acropora aculeus across depths and regions, finding strong geographic differentiation but no depth-related genetic structuring.
DOI 10.1101/2025.04.08.647879 - MicrobiologybioRxivPreprint
Viral and bacterial traits associated with the success of the yellow pencil coral, Madracis mirabilis, in Curacaos coral reefs
Cynthia B. Silveira, Bailey A. Wallace, Natascha S. Varona…·Mark J. A. Vermeij
This study identifies microbial traits, including enriched bacterial and viral communities, associated with the success of Madracis mirabilis in Curacao coral reefs.
DOI 10.1101/2025.04.04.647251 - EcologyEcological ApplicationsPeer-reviewed
Going with the flow: leveraging reef-scale hydrodynamics for upscaling larval-based restoration
Marine Gouezo, Clothilde Langlais, Jack Beardsley…·Christopher Doropoulos
This study develops a 3D reef-scale dispersal model to predict larval dispersal patterns and optimize coral restoration efforts by identifying optimal collection and deployment times and locations.
14 citationstop 2% - Cell BiologySymbiosisPeer-reviewed
A novel menthol-DCMU bleaching method for foraminifera: Generating aposymbiotic hosts for symbiosis research
Christiane Schmidt, Diana Nicole Puerto Rueda, Moritz Nusser…·Simon K. Davy
This paper develops a menthol-DCMU bleaching method to generate aposymbiotic foraminifera for symbiosis research, showing effectiveness in removing symbionts from two species.
8 citations - EcologyClimate Change EcologyPeer-reviewed
Headwinds to Understanding Stress Response Physiology: A Systematic Review Reveals Mismatch between Real and Simulated Marine Heatwaves
Harmony A. Martell, Simon D. Donner
This paper reviews lab studies of coral bleaching and finds they use unrealistic heating conditions, leading to inaccurate predictions of coral responses to marine heatwaves.
1 citation