Discover, rate, and discuss biology preprints.
363,000+ bioRxiv and medRxiv preprints, including those later published in peer-reviewed journals, across 26 biological disciplines.
Recent preprints
- BiophysicsbioRxivPreprint
Surface Tension and Stalk Elongation Drive Dictyostelium Morphogenesis
Seiya Nishikawa, Satoshi Kuwana, Gen Honda…·Shuji Ishihara
This study identifies surface tension and stalk elongation as key mechanical drivers of fruiting body formation in Dictyostelium discoideum using a hydrodynamic model and experimental measurements.
DOI 10.64898/2026.09.02.748873 - BiophysicsbioRxivPreprint
Native Hydrogen/Deuterium Exchange Ion Mobility Mass Spectrometry of Structured DNA Oligonucleotides
Matthieu Ranz, Romane Guisiano, Eric Largy, Valérie Gabelica
The paper integrates ion mobility spectrometry with HDX/MS to better resolve conformational ensembles in DNA oligonucleotides, showing improved kinetic analysis and distinction of non-specific cation binding.
DOI 10.64898/2026.09.03.749223 - BiophysicsbioRxivPreprint
Cap-Independent Translation Regulation of VEGF Using CRISPR-dCas13d
Mohammad L. Kabir, Sineth G. Kodikara, Najmah Al Ramel…·Hamza Balci
This study shows CRISPR-dCas13d can repress VEGF translation by destabilizing its G-quadruplex IRES under hypoxia, without affecting mRNA levels.
- BiophysicsbioRxivPreprint
Environment-driven active transport of influenza A virus
Siddhansh Agarwal, Liya F. Oster, Boris A. Veytsman…·Daniel A. Fletcher
This study shows influenza A virus actively transports itself by modifying its environment, using its envelope proteins to create directional cues and bias movement.
DOI 10.64898/2026.09.03.749308 - BiophysicsbioRxivPreprint
STED microscopy reveals mitotic stage-dependent CENP-A organization
T.C.Q. Burgers, Sietse J. Dijt, Luca Vitrano…·Rifka Vlijm
The paper uses STED microscopy to study CENP-A organization during mitosis in human cells, finding stage-dependent spatial variations in its structure.
- BiophysicsThe Journal of Physical Chemistry LettersPeer-reviewed
Lipid Composition Modulates Secondary Structure at the Biocondensate-Membrane Interface
The paper uses SEIRAS to show that membrane charge affects the secondary structure of poly-GR condensates at the membrane interface.
DOI 10.1021/acs.jpclett.6c02184 - BiophysicsNucleic Acids ResearchPeer-reviewed
Cryo-EM Structure of a 95-Basepair Double-Stranded DNA Minicircle at 5.3 A Resolution
Yukang Liu, Kyu-Yeon Lee, Yao He…·Peter Zhifeng Qin
The paper reports a cryo-EM structure of a 95-basepair DNA minicircle at 5.3 Å resolution, revealing its B-DNA configuration and structural features.
DOI 10.1093/nar/gkag885 - BiophysicsbioRxivPreprint
Tree-to-cycle transition scale characterizes trade-off between dissipation and construction cost in adaptive transport networks
Justina Stark, Christophe Godin
The paper introduces a metric to quantify the trade-off between dissipation and construction cost in adaptive transport networks using a single value derived from network architecture.
DOI 10.64898/2026.09.02.748799 - BiophysicsbioRxivPreprint
The wild-type hERG cryo-EM structure fails to support conduction and evolve toward an inactivated-like selectivity filter conformation in molecular dynamics simulations
Maria Vittoria Leonardi, Antonio Michelucci, Ye. K. Aldakul…·Simone Furini
The study uses molecular dynamics simulations to show that wild-type hERG fails to conduct K+ and evolves toward an inactivated-like conformation, contrasting with the N629D mutant which maintains conductivity.
- BiophysicsbioRxivPreprint
DNA aptamers to interfere with HasA, the hemophore of the heme assimilation system in Pseudomonas aeruginosa, as a potential antimicrobial strategy
Federico Bosetto, Tongyuan Wei, Katherine M. Stott…·Ioanna Mela
This paper identifies DNA aptamers that bind the truncated form of HasA, a hemophore in Pseudomonas aeruginosa, under acidic conditions, showing potential as antimicrobial agents.
DOI 10.64898/2026.09.03.749098 - BiophysicsbioRxivPreprint
Multi-dimensional DNA nanostructures isothermally assembled in hydrated ionic liquids
Hannah Talbot, Lauren Nguyen, Dhanush Gandavadi…·Arun Richard Chandrasekaran
This paper demonstrates the isothermal assembly of DNA nanostructures and 3D crystals in hydrated ionic liquids, enhancing biostability and enabling cell internalization without thermal annealing.
DOI 10.64898/2026.09.02.744742 - BiophysicsbioRxivPreprint
Catalytic and inhibitory architecture of comammox ammonia monooxygenase
Zongqiang Li, Tieqiang Mao, Xiaoyun Yang…·Wei Peng
This study reports cryo-EM structures of comammox AMO from Nitrospira inopinata and identifies its catalytic and inhibitor-responsive architecture, revealing a methyl-PQ-linked mechanism and stress response to nitrification inhibitors.
DOI 10.64898/2026.09.02.748776 - BiophysicsbioRxivPreprint
Testable Clinical Signatures for Go-or-Grow Dichotomy of Gliomas along Anisotropic White-matter Tracts
Sounak Sadhukhan, Debarpita Santra, Souvik Dey
The paper derives a formula for tumor expansion speed based on cell movement and growth rates and validates it along white-matter tracts using diffusion tensor imaging.
- BiophysicsJournal of Chemical Information and ModelingPeer-reviewed
Synergistic Effects of pH and Temperature on Dengue VirusEnvelope Dimers: Insights from Microsecond MolecularDynamics Simulations
Georcki Ropón‐Palacios, Luís Gustavo Fávaro Crespi, Ingrid B. S. Martins…·Alexandre Suman de Araújo
This study uses molecular dynamics simulations to show how pH and temperature together destabilize dengue virus envelope dimers, revealing a 'compensatory embrace' mechanism and potential targets for antiviral drugs.
DOI 10.1021/acs.jcim.6c01334 - BiophysicsPhysical review. EPeer-reviewed
Polarized neutrons for the study of individual and collective fast dynamics in proteins
Anonymous, Jacques Ollivier, J. R. Stewart, Judith Peters
The paper uses polarized neutron scattering to study individual and collective fast dynamics in proteins, highlighting challenges in analyzing coherent scattering contributions.
1 citationtop 5% - BiophysicsJournal of Chemical Information and ModelingPeer-reviewed
Thermodynamics and unbinding kinetics of A22 at multiple actin binding sites revealed by enhanced sampling simulations
Anuj Kumar, Debabrata Pramanik
This study uses enhanced sampling simulations to analyze A22-actin interactions, revealing binding affinities, residence times, and unbinding kinetics across multiple sites.
DOI 10.1021/acs.jcim.6c01530 - BiophysicsMicroscopy and MicroanalysisPeer-reviewed
Open Fourier Ptychographic Microscopy (OpenFPM)
Lewis D. Walker, Laura S. Copeland, Liam M. Rooney…·Gail McConnell
OpenFPM provides an open-source, low-cost Fourier ptychographic microscopy platform for high-resolution biomedical imaging.
DOI 10.1093/mam/ozag103 - BiophysicsJournal of Chemical Information and ModelingPeer-reviewed
Current-voltage characteristics of K+ channels estimated by MD simulations and Markov State Models
Simone Furini, Luigi Catacuzzeno
The paper estimates current-voltage characteristics of K+ channels using Markov State Models from MD simulations, showing agreement with direct simulations at low potentials.
DOI 10.1021/acs.jcim.6c01258 - BiophysicsbioRxivPreprint
A rugged binding landscape unifies static and dynamic paradigms in protein-protein interactions
Te Liu, Sichao Huang, Wenhua Li…·Bin Sun
This study shows that protein-protein interactions can follow static or dynamic binding paradigms, with distinct temperature dependencies and mechanisms affecting affinity prediction.
DOI 10.64898/2026.03.29.715155