Author

A. B. Oliveira Junior

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 3

Signature Assays, Organisms & Methods

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Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:protein folding & dynamics· 2 Assay:protein structure· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Assay:Hi-C· 1

Frequent Co-Authors

J. N. Onuchic· 3 shared V. B. P. LEITE· 2 shared B. S. Ruben· 1 shared K. Knapp· 1 shared M. Di Pierro· 1 shared M. N. Sanches· 1 shared P. G. Wolynes· 1 shared P. Kulkarni· 1 shared

Activity by Year

2021-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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3 shared papersBiophysics

J. N. Onuchic

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3 papers

Recent·Most cited

BiophysicsbioRxivSep 3, 2022

Structural Reorganization and Relaxation Dynamics of Axially Stressed Chromosomes

B. S. Ruben, S. Brahmachari, V. G. Contessoto…·J. N. Onuchic

This study uses a coarse-grained polymer model to simulate mitotic chromosome mechanics, finding they are ten times stiffer than interphase chromosomes and exhibit viscoelastic behavior.

DOI 10.1016/j.bpj.2023.03.029

Hi-Cstatistical model

𝕏 PostBluesky

BiophysicsbioRxivOct 28, 2021

Examining the Ensembles of Amyloid-β Monomer Variants and their Propensities to Form Fibers Using an Energy Landscape Visualization Method

M. N. Sanches, K. Knapp, A. B. Oliveira Junior…·V. B. P. LEITE

This study uses ELViM to analyze Aβ40 and Aβ42 monomers and their mutations, showing how ELViM distinguishes fiber-forming from non-fiber-forming variants.

DOI 10.1021/acs.jpcb.1c08525

protein structuredeep learning

𝕏 PostBluesky

BiophysicsbioRxivJan 28, 2021

Exploring Energy Landscapes of Intrinsically Disordered Proteins: Insights into Functional Mechanisms

A. B. Oliveira Junior, X. Lin, P. Kulkarni…·V. B. P. Leite

This paper introduces ELViM, a reaction coordinate-free method to analyze energy landscapes of IDPs, revealing conformational differences between phosphoforms of PAGE4.

DOI 10.1021/acs.jctc.1c00027

protein structuredeep learning

𝕏 PostBluesky