Author

A. Bonato

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 4 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:chromatin & epigenetic regulation· 2 Approach:statistical model· 2 Organism:yeast· 2 Approach:biophysical modeling· 1 Assay:DNA methylation· 1

Frequent Co-Authors

D. Michieletto· 4 shared C. Dekker· 2 shared D. Marenduzzo· 2 shared J.-K. Ryu· 2 shared A. J. Katan· 1 shared B. Kessel· 1 shared C. Bouchoux· 1 shared E. Kim· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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4 shared papersBiophysics

D. Michieletto

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Topological Gelation of Reconnecting Polymers

A. Bonato, D. Marenduzzo, D. Michieletto, E. Orlandini

This study investigates topological gelation in semiflexible polymer rings under confinement, showing that stiffness or concentration can trigger a transition from segregated to linked polymer networks.

bioRxiv · Sep 21, 2022Biophysics

Three-Dimensional Loop Extrusion

A. Bonato, D. Michieletto

This paper introduces a 3D 'trans-grabbing' model for loop extrusion that explains Z-loop formation, road-block bypassing, and step sizes larger than SMC size through molecular dynamics simulations.

bioRxiv · Aug 28, 2021Biophysics

Condensin extrudes DNA loops in steps up to hundreds of base pairs that are generated by ATP binding events

J.-K. Ryu, S.-H. Rah, R. Janissen, J. W. J. Kerssemakers, A. Bonato, D. Michieletto, C. Dekker

This study shows that condensin extrudes DNA loops in steps of up to 500 bp, driven by ATP binding, using magnetic tweezers and simulations.

bioRxiv · Nov 4, 2020Biophysics

Phase separation induced by cohesin SMC protein complexes

J.-K. Ryu, C. Bouchoux, H. W. Liu, E. Kim, M. Minamino, R. de Groot, A. J. Katan, A. Bonato, D. Marenduzzo, D. Michieletto, F. Uhlmann, C. Dekker

Yeast cohesin phase separates with DNA into liquid droplets via ATP-independent DNA bridging.

bioRxiv · Jun 13, 2020Biophysics

3D bioprinting of architected hydrogels from entangled microstrands

B. Kessel, M. Lee, A. Bonato, Y. Tinguely, E. Tosoratti, M. Zenobi-Wong

This paper introduces a novel method for creating architected hydrogels using entangled microstrands for 3D bioprinting, resulting in improved mechanical properties and cell viability.

bioRxiv · Dec 13, 2019 · PreprintBioengineering