Author
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
4 papers
Recent·Most cited
B. Pradhan, R. Barth, E. Kim, I. F. Davidson, B. Bauer, T. van Laar, W. Yang, J.-K. Ryu, J. van der Torre, J.-M. Peters, C. Dekker
The paper shows that SMC complexes can extrude DNA loops around large DNA-bound obstacles, suggesting a nontopological mechanism for loop extrusion.
bioRxiv · Jul 15, 2021Biophysics
J.-K. Ryu, S.-H. Rah, R. Janissen, J. W. J. Kerssemakers, A. Bonato, D. Michieletto, C. Dekker
This study shows that condensin extrudes DNA loops in steps of up to 500 bp, driven by ATP binding, using magnetic tweezers and simulations.
bioRxiv · Nov 4, 2020Biophysics
J.-K. Ryu, C. Bouchoux, H. W. Liu, E. Kim, M. Minamino, R. de Groot, A. J. Katan, A. Bonato, D. Marenduzzo, D. Michieletto, F. Uhlmann, C. Dekker
Yeast cohesin phase separates with DNA into liquid droplets via ATP-independent DNA bridging.
bioRxiv · Jun 13, 2020Biophysics
J.-K. Ryu, A. J. Katan, E. O. van der Sluis, T. Wisse, R. de Groot, C. Hearing, C. Dekker
The paper uses AFM to visualize yeast condensin and its DNA interactions, suggesting a scrunching model for DNA loop extrusion.
bioRxiv · Dec 13, 2019 · PreprintBiophysics