Author

A. Cuenod

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5

Signature Assays, Organisms & Methods

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Assay:metagenomics· 4 Organism:bacteria (other)· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Approach:machine learning (classical)· 2 Research Focus:cell signaling & trafficking· 1

Frequent Co-Authors

A. Egli· 4 shared O. Dubuis· 2 shared S. Graf· 2 shared A. Candela· 1 shared A. Creasy-Marrazzo· 1 shared A. Gomez Asenjo· 1 shared A. Guerrero-Lopez· 1 shared A. I. Khan· 1 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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4 shared papersMicrobiology

A. Egli

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Type IV-A3 CRISPR-Cas systems drive inter-plasmid conflicts by acquiring spacers in trans

F. Benz, S. Camara-Wilpert, J. Russel, K. G. Wandera, R. Cepaite, M. Ares-Arroyo, J. V. Gomes-Filho, F. Englert, J. Kuehn, S. Gloor, A. Cuenod, M. Aguila-Sans, L. Maccario, A. Egli, L. Randau, , R. Pinilla-Redondo

This study shows type IV-A3 CRISPR-Cas systems use host adaptation machinery to update their CRISPR arrays and interfere with plasmid and phage transfer, supporting their role in plasmid competition.

bioRxiv · Jun 23, 2023 · PreprintMicrobiology

Phage predation, disease severity and pathogen genetic diversity in cholera patients

N. Madi, E. T. Cato, M. A. Sayeed, A. Creasy-Marrazzo, A. Cuenod, K. Islam, M. I. U. Khabir, M. T. R. Bhuiyan, Y. Begum, E. Freeman, A. Vustepalli, L. Brinkley, M. Kamat, L. S. Bailey, K. B. Basso, , E. J. Nelson

A study of cholera patients in Bangladesh identifies phage predation as a biomarker of disease severity and driver of coevolution within patients.

bioRxiv · Jun 14, 2023Microbiology

Ancient methicillin-resistant Staphylococcus aureus: expanding current knowledge using molecular epidemiological characterization of a Swiss legacy collection

V. Benvenga, A. Cuenod, S. Purushothaman, G. Dasen, M. Weisser, S. Bassetti, T. Roloff, M. Siegemund, U. Heininger, J. A. Bielicki, M. Wehrli, P. Friderich, R. Frei, A. Widmer, K. Herzog, , A. Egli

The paper characterizes ancient MRSA isolates from 1965-1987 and compares them to modern isolates, identifying novel sequence types and lineage dynamics.

bioRxiv · Apr 27, 2023 · PreprintMicrobiology

Automatic discrimination of species within the Enterobacter cloacae complex using MALDI-TOF Mass Spectrometry and supervised algorithms

A. Candela, A. Guerrero-Lopez, M. Mateos, A. Gomez Asenjo, M. J. Arroyo, M. Hernandez-Garcia, R. del Campo, E. Cercenado, A. Cuenod, G. Mendez, L. Mancera, J. d. D. Caballero, L. Martinez-Garcia, D. Gijon, M. I. Morosini, , B. Rodriguez-Sanchez

This paper develops machine learning models using MALDI-TOF MS data to accurately differentiate species within the Enterobacter cloacae complex.

bioRxiv · Nov 2, 2021 · PreprintMicrobiology

Direct Antimicrobial Resistance Prediction from clinical MALDI-TOF mass spectra using Machine Learning

C. Weis, A. Cuenod, B. Rieck, F. Llinares-Lopez, O. Dubuis, S. Graf, C. Lang, M. Oberle, M. Brackmann, K. K. Soegaard, M. Osthoff, K. Borgwardt, A. Egli

This study uses machine learning to predict antimicrobial resistance from MALDI-TOF mass spectra, achieving high AUROC values and showing potential to improve clinical treatment decisions.

bioRxiv · Jul 30, 2020Microbiology