Author

A. Feder

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 3 Evolutionary Biology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:host-pathogen & immune response· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Organism:human· 2 Assay:whole-genome sequencing· 2 Research Focus:cell type annotation· 1

Frequent Co-Authors

G. B. Martin· 2 shared J. J. Giovannoni· 2 shared S. Mainiero· 2 shared A. A. Schaffer· 1 shared A. Gur· 1 shared A. J. Fischer· 1 shared A. J. Pamatmat· 1 shared A. M. Moustafa· 1 shared

Activity by Year

2016-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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2 shared papersPlant Biology

G. B. Martin

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Author profile →

5 papers

Recent·Most cited

Parallel Evolution of Linezolid Resistant Staphylococcus aureus in Patients with Cystic Fibrosis

N. J. Pitcher, A. Feder, N. Bolden, C. F. Zirbes, A. J. Pamatmat, L. D. Boyken, J. J. Hill, A. Thurman, V. Reeb, H. S. Porterfield, A. M. Moustafa, P. J. Planet, A. J. Fischer

This study identifies multiple genetic mechanisms of linezolid resistance in Staphylococcus aureus from cystic fibrosis patients, showing resistance developed in specific MRSA backgrounds.

bioRxiv · May 2, 2023 · PreprintMicrobiology

Ptr1 evolved convergently with RPS2 and Mr5 to mediate recognition of AvrRpt2 in diverse solanaceous species

D. C. Mazo-Molina, S. Mainiero, B. J. Haefner, R. Bednarek, J. Zhang, A. Feder, K. Shi, S. Strickler, G. B. Martin

The paper identifies Ptr1 as a resistance gene in Solanum lycopersicoides that convergently evolved with Mr5 and RPS2 to recognize AvrRpt2 in diverse solanaceous species.

bioRxiv · Mar 5, 2020Plant Biology

Melon ethylene-mediated transcriptome and methylome dynamics provide insights to volatile production

J. J. Giovannoni, A. Feder, C. Jiao, N. Galpaz, J. T. Vrebalov, Y. Xu, V. Portnoy, G. Tzuri, I. Gonda, J. Burger, A. Gur, Y. Tadmor, A. A. Schaffer, E. Lewinsohn, N. Katzir, Z. Fei

This study investigates ethylene's role in melon ripening by analyzing transcriptome and methylome changes, revealing connections between DNA methylation and volatile compound production.

bioRxiv · Jan 28, 2020 · PreprintPlant Biology

The Ptr1 locus of Solanum lycopersicoides confers resistance to race 1 strains of Pseudomonas syringae pv. tomato and to Ralstonia pseudosolanacearum by recognizing the type III effectors AvrRpt2/RipBN

C. Mazo-Molina, S. Mainiero, S. R. Hind, C. M. Kraus, M. Vachev, F. Maviane Macia, M. Lindeberg, S. Saha, S. R. Strickler, A. Feder, J. J. Giovannoni, C. D. Smart, N. Peeters, G. B. Martin

The paper identifies a resistance locus in Solanum lycopersicoides that recognizes type III effectors from Pseudomonas syringae and Ralstonia pseudosolanacearum, providing resistance to bacterial speck disease.

bioRxiv · Jan 11, 2019Plant Biology

Within-patient HIV mutation frequencies reveal fitness costs of CpG dinucleotides, drastic amino acid changes and G->A mutations

K. Theys, A. Feder, M. Gelbart, M. Hartl, A. Stern, P. S. Pennings

The paper estimates the fitness costs of 870 HIV mutations in vivo by analyzing mutation frequencies in the pol gene across 160 patients, finding higher costs for non-synonymous, drastic amino acid changes, and CpG-creating mutations.

bioRxiv · Jun 3, 2016Evolutionary Biology