Author

A. Nishida

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3 Evolutionary Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Organism:human· 4 Research Focus:cell type annotation· 3 Approach:experimental assay· 3 Approach:statistical model· 2 Assay:bulk RNA-seq· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Forero· 1 shared A. K. Takeda· 1 shared A. W. Weston· 1 shared E. G. Sweeney· 1 shared H. Nakatani· 1 shared H. Ochman· 1 shared I. Gat-Viks· 1 shared J. Morrison· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 9 mutual co-author links

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1 shared paperMicrobiology

A. Forero

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Origins and Evolution of Novel Bacteroides in Captive Apes

A. Nishida, H. Ochman

The paper tracks genomic changes in Bacteroides xylanisolvens strains in captive apes, showing convergent gene acquisitions related to host mucin metabolism.

bioRxiv · Oct 20, 2023 · PreprintEvolutionary Biology

Pleural macrophages translocate to the lung during infection to promote improved influenza outcomes

J. P. Stumpff, S. Y. Kim, A. Forero, A. Nishida, Y. Steuerman, I. Gat-Viks, M. G. Nair, J. Morrison

This study identifies pleural macrophages migrating to the lung during influenza infection, which correlates with improved disease outcomes.

bioRxiv · May 25, 2022Microbiology

Analysis of healthy reference ranges for clinically relevant gut microbial indicators: Mykinso cohort study in Japan

S. Watanabe, S. Kameoka, N. O. Shinozaki, R. Kubo, A. Nishida, M. Kuriyama, A. K. Takeda

This study establishes reference ranges for gut microbial indicators in a Japanese cohort, finding strong correlations with age, sex, and lifestyle factors, and highlighting the absence of a single typical gut microbiota type.

bioRxiv · Feb 25, 2020 · PreprintMicrobiology

Development of the Brief Personal Values Inventory for sense of values in the Japanese general population

S. Ozawa, Y. Iijima, S. Ando, N. Okada, T. Kawashima, k. Ohta, S. Yamasaki, K. Kasai, A. Nishida, H. Nakatani, S. Koike

The paper develops a shorter questionnaire, BPVI, to assess sense of values in Japanese adults, showing it aligns with Schwartz's value theory and is suitable for comparing values across age groups.

bioRxiv · Nov 26, 2018Scientific Communication & Education

Agent-Based Modeling Demonstrates How Local Chemotactic Behavior Can Shape Biofilm Architecture

E. G. Sweeney, A. Nishida, A. W. Weston, M. S. Banuelos, K. Potter, J. S. Conery, K. Guillemin

The paper uses agent-based modeling to show that local chemotactic behavior of H. pylori cells toward AI-2 can explain the global architecture of biofilms.

bioRxiv · Sep 20, 2018Microbiology