Author

A. Pecinka

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Plant Biology· 5 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

Click to filter · or open tag

Organism:Arabidopsis· 3 Approach:experimental assay· 3 Research Focus:gene regulatory network inference· 3 Organism:plant (other)· 3 Approach:statistical model· 3 Assay:bulk RNA-seq· 2 Research Focus:cell type annotation· 2 Research Focus:chromatin & epigenetic regulation· 2

Frequent Co-Authors

B. Strejckova· 2 shared J. Safar· 2 shared A. Lazaro· 1 shared A. Nowicka· 1 shared A. Pasha· 1 shared C. Camilleri· 1 shared C. Hardtke· 1 shared D. Samakovli· 1 shared

Activity by Year

2018-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 11 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersPlant Biology

B. Strejckova

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Sucrose-responsive osmoregulation of plant cell size by a long non-coding RNA

J. Hajny, T. Travnickova, R. M. I. K. Rony, S. Sacharowski, M. Krzyszton, D. Zalabak, C. Hardtke, A. Pecinka, S. Swiezewski, J. M. Van Norman, O. Novak

The paper identifies CARMA as a long non-coding RNA that regulates CANAR expression in the phloem to control cell size and vascular tissue formation in response to sugar and osmotic stress.

bioRxiv · Feb 19, 2024Plant Biology

The transcriptome landscape of developing barley seeds reveals H3K27me3 dynamics in endosperm tissues

M. Kovacik, A. Nowicka, J. Zwyrtkov, B. Strejckova, I. Vardanega, E. N. Esteban, A. Pasha, K. Kaduchova, M. Krautsova, J. Safar, N. J. Provart, R. Simon, A. Pecinka

bioRxiv · Jul 26, 2023 · PreprintPlant Biology

The interplay of HSP90s with YDA regulates main body axis formation during early embryogenesis in Arabidopsis

D. Samakovli, T. Ticha, T. Vavrdova, N. Zavorkova, A. Pecinka, M. Ovecka, J. Samaj

This study identifies HSP90s and YDA as regulators of early Arabidopsis embryo development through epigenetic control of WOX2 and WOX8 gene expression.

bioRxiv · Sep 29, 2020 · PreprintPlant Biology

The evolutionary dynamics of genetic incompatibilities introduced by duplicated genes in Arabidopsis thaliana

W.-B. Jiao, V. Patel, J. Klasen, F. Liu, P. Pecinkova, M. Ferrand, I. Gy, C. Camilleri, S. Effgen, M. Koornneef, A. Pecinka, O. Loudet, K. Schneeberger

The paper identifies genetic incompatibilities from duplicated genes in Arabidopsis thaliana using GWAS and natural population data, showing how these incompatibilities coexist and are mitigated by additional gene copies.

bioRxiv · Sep 21, 2020Evolutionary Biology

IDENTIFICATION OF POLYCOMB REPRESSIVE COMPLEX 1 AND 2 CORE COMPONENTS IN HEXAPLOID BREAD WHEAT

B. Strejckova, R. Cegan, A. Pecinka, Z. Milec, J. Safar

The paper identifies and analyzes Polycomb repressive complex 1 and 2 subunits in bread wheat, reconstructs their evolutionary history, and examines their transcription across 33 developmental stages.

bioRxiv · Jul 16, 2019Plant Biology

PERPETUAL FLOWERING2 coordinates the vernalization response and perennial flowering in Arabis alpina

A. Lazaro, Y. Zhou, M. Giesguth, K. Nawaz, S. Bergonzi, A. Pecinka, G. Coupland, M. C. Albani

This study identifies PEP2's role in regulating vernalization and flowering in Arabis alpina through both PEP1-dependent and independent pathways.

bioRxiv · Nov 14, 2018Plant Biology