Alex Finnegan

This study uses yeast to investigate how DNA methylation is regulated by DNMT3 family members and identifies sequence preferences and spatial patterns of methylation.

This paper develops a computational framework to model genome-wide nucleosome landscape by quantifying sequence features' contributions to occupancy, translational, and rotational positioning in S. cerevisiae.

This paper introduces a method to extract learned features from deep neural networks using maximum entropy principles, demonstrating its application in identifying transcription factor motifs and nucleosome positioning signals.