Author

B. James

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Animal Behavior & Cognition· 1 Cancer Biology· 1 Evolutionary Biology· 1 Immunology· 1 Plant Biology· 1 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 4 Research Focus:differential expression· 4 Assay:bulk RNA-seq· 2 Research Focus:gene regulatory network inference· 2 Research Focus:host-pathogen & immune response· 2 Assay:scRNA-seq· 2 Approach:statistical model· 2

Frequent Co-Authors

A. Alvarado· 1 shared A. Bastian· 1 shared A. E. Clark· 1 shared A. F. Carlin· 1 shared A. Malhotra· 1 shared A. Marshall-Colon· 1 shared A. McGaughran· 1 shared B. A. Croker· 1 shared

Activity by Year

2018-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 16 mutual co-author links

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1 shared paperImmunology

A. Alvarado

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

The stem cell-type transcriptome of bioenergy sorghum reveals the spatial regulation of secondary cell wall networks

J. Fu, B. McKinley, B. James, W. Chrisler, L. M. Markillie, M. J. Gaffrey, H. D. Mitchell, G. Orr, K. Swaminathan, J. Mullet, A. Marshall-Colon

The paper identifies cell-type specific gene expression and regulatory networks in bioenergy sorghum stems to enable engineering for biofuel production.

bioRxiv · Apr 22, 2023 · PreprintPlant Biology

The lung employs an intrinsic surfactant-mediated inflammatory response for viral defense

S. L. Leibel, R. N. McVicar, R. Murad, E. M. Kwong, A. E. Clark, A. Alvarado, B. A. Grimmig, R. Nuryyev, R. E. Young, J. C. Lee, W. Peng, Y. P. Zhu, E. Griffis, C. J. Nowell, B. James, , E. Y. Snyder

This study shows that surfactant proteins mediate an intrinsic inflammatory response in the lung to defend against SARS-CoV-2 infection.

bioRxiv · Jan 26, 2023 · PreprintImmunology

Vocal correlates of arousal in bottlenose dolphins (Tursiops spp.) in human care

R. Probert, A. Bastian, S. Elwen, B. James, T. Gridley

This study examines how scheduled activities in a dolphin facility affect vocal behavior, finding increased arousal and vocal production during staff arrival and feeding.

bioRxiv · Apr 19, 2021Animal Behavior & Cognition

Tumor-educated monocyte-dendritic progenitors promote a metastatic switch

K. Magidey-Klein, K. Klever, T. J. Cooper, R. Normand, T. Zhang, M. Timaner, Z. Raviv, B. James, R. Gazit, Z. A. Ronai, S. S. Shen-Orr, Y. Shaked

The paper shows that metastatic tumors drive HSPCs to differentiate into monocyte-dendritic progenitors via IL-6, promoting metastasis.

bioRxiv · Aug 25, 2020 · PreprintCancer Biology

Oxidative stress delays development and alters gene function in the agricultural pest moth, Helicoverpa armigera

N. Apirajkamol, B. James, T. K. Walsh, A. McGaughran

This study examines how oxidative stress affects development and gene expression in the moth Helicoverpa armigera, finding delayed development and altered gene function.

bioRxiv · Jan 14, 2020Evolutionary Biology

Spikeling: a low-cost hardware implementation of a spiking neuron for neuroscience teaching and outreach.

T. Baden, B. James, M. J. Zimmermann, P. Bartel, D. M. Grijseels, L. Lagnado, M. Maravall

Spikeling is a low-cost, open-source hardware device that simulates spiking neurons for educational purposes, enabling hands-on learning of neuronal behavior.

bioRxiv · May 21, 2018Scientific Communication & Education