RNA conformational propensities determine cellular activity
M. L. Kelly, R. Roy, A. Geng…·H. M. Al-Hashimi
The paper alters and measures conformational propensities of HIV-1 TAR RNA to predict binding affinities and cellular activity.
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6 papers
Recent·Most cited
M. L. Kelly, R. Roy, A. Geng…·H. M. Al-Hashimi
The paper alters and measures conformational propensities of HIV-1 TAR RNA to predict binding affinities and cellular activity.
M. L. Kelly, C.-C. Chu, H. Shi…·H. M. Al-Hashimi
This study examines the non-specific binding of three drug-like compounds to HIV-1 stem-loop RNAs, showing they inhibit RNA function and exhibit off-target interactions.
K. Tsai, A. A. J. Vasudevan, C. MartInez-Campos…·B. R. Cullen
This study shows HIV-1 transcripts are acetylated at cytidine residues by NAT10, enhancing viral RNA stability and gene expression, suggesting ac4C as a potential antiviral target.
L. R. Ganser, C.-C. Chu, H. P. Bogerd…·H. M. Al-Hashimi
The paper develops a method to assess RNA excited-state stability and abundance in cells using mutations and applies it to HIV-1 regulatory RNAs, showing ESs form with comparable abundance in vitro and in vivo.
D. Courtney, A. Chalem, H. P. Bogerd…·B. R. Cullen
This study shows that murine leukemia virus (MLV) transcripts have high levels of m6A, m5C, and Nm modifications, which enhance viral replication and gene expression.
B. C. Poling, A. M. Price, M. A. Luftig, B. R. Cullen
This paper shows that EBV miR-BHRF1 microRNAs regulate EBNA-LP mRNA stability in cis, not trans, and their loss reduces B-cell transformation.