Author

C. Vanni

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 5 Evolutionary Biology· 1

Signature Assays, Organisms & Methods

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Assay:metagenomics· 6 Research Focus:cell type annotation· 3 Approach:deep learning· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Approach:comparative / phylogenetic analysis· 1 Research Focus:database / resource· 1

Frequent Co-Authors

A. Fernandez-Guerra· 4 shared A. M. Eren· 4 shared T. O. Delmont· 4 shared M. S. Schechter· 3 shared E. Pelletier· 2 shared M. Gaia· 2 shared M. Steinegger· 2 shared O. Jaillon· 2 shared

Activity by Year

2020-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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4 shared papersMicrobiology

A. Fernandez-Guerra

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Microbes with higher metabolic independence are enriched in human gut microbiomes under stress

I. Veseli, Y. T. Chen, M. S. Schechter, C. Vanni, E. C. Fogarty, A. R. Watson, B. A. Jabri, R. Blekhman, A. D. Willis, M. K. Yu, A. Fernandez-Guerra, J. Fussel, A. M. Eren

The paper identifies high metabolic independence as a marker of gut microbiome changes in IBD, using a software framework to analyze metagenomic data from healthy and IBD patients.

bioRxiv · May 10, 2023Microbiology

Plankton-infecting relatives of herpesviruses clarify the evolutionary trajectory of giant viruses

M. Gaia, L. Meng, E. Pelletier, P. Forterre, C. Vanni, A. Fernendez-Guerra, O. Jaillon, P. Wincker, H. Ogata, M. Krupovic, T. O. Delmont

The paper identifies plankton-infecting herpesvirus relatives in marine environments, revealing a new viral phylum with evolutionary links to both herpesviruses and giant viruses.

bioRxiv · Dec 27, 2021Evolutionary Biology

An ecological perspective on microbial genes of unknown function in soil

H. Holland-Moritz, C. Vanni, A. Fernandez-Guerra, A. Bissett, N. Fierer

The paper identifies and analyzes genes of unknown function in soil metagenomes, finding they are prevalent in certain soil types and often associated with uncharacterized microbial phyla and mobile genetic elements.

bioRxiv · Dec 2, 2021 · PreprintMicrobiology

AGNOSTOS-DB: a resource to unlock the uncharted regions of the coding sequence space

C. Vanni, M. S. Schechter, T. O. Delmont, A. M. Eren, M. Steinegger, F. O. Gloeckner, A. Fernandez-Guerra

AGNOSTOS-DB is a database that integrates known and unknown coding sequences from genomes and metagenomes to enhance understanding of genes of unknown function.

bioRxiv · Jun 7, 2021 · PreprintMicrobiology

Functional repertoire convergence of distantly related eukaryotic plankton lineages revealed by genome-resolved metagenomics

T. O. Delmont, M. Gaia, D. D. Hinsinger, P. Fremont, C. Vanni, A. Fernandez Guerra, A. M. Eren, A. Kourlaiev, L. d'Agata, Q. Clayssen, E. Villar, K. Labadie, C. Cruaud, J. Poulain, C. Da Silva, , O. Jaillon

The paper uses Tara Oceans metagenomic data to reconstruct and analyze eukaryotic genomes, revealing functional convergence among distantly related plankton lineages.

bioRxiv · Oct 15, 2020 · PreprintMicrobiology

Unifying the known and unknown microbial coding sequence space

C. Vanni, M. S. Schechter, S. Acinas, A. Barberan, P. L. Buttigieg, E. O. Casamayor, T. O. Delmont, C. M. Duarte, A. M. Eren, R. D. Finn, R. Kottmann, A. Mitchell, P. Sanchez, K. Siren, M. Steinegger, , A. Fernandez-Guerra

The paper presents a framework and workflow to integrate genes of unknown function into genomic analysis, quantifying their diversity and relevance across biomes and providing a resource for studying Cand. Patescibacteria.

bioRxiv · Jun 30, 2020Microbiology