Author

C. X. Chan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 4 Biochemistry· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 4 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:gene regulatory network inference· 3 Assay:whole-genome sequencing· 3 Research Focus:phylogenetics / evolution· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

C. Iha· 2 shared H. Verbruggen· 2 shared K. Uthanumallian· 2 shared S. I. Repetti· 2 shared A. A. S. Adam· 1 shared A. M. Williams· 1 shared A. Mcminigal· 1 shared C. J. Jackson· 1 shared

Activity by Year

2017-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersEvolutionary Biology

C. Iha

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

In vivo structure probing of RNA in Archaea: Novel insights into the ribosome structure of Methanosarcina acetivorans

A. M. Williams, E. Jolley, M. G. Santiago-Martinez, C. X. Chan, R. Gutell, J. G. Ferry, P. C. Bevilacqua

This study applies Structure-seq2 to probe in vivo RNA structure in Methanosarcina acetivorans, revealing similarities and differences in rRNA reactivity between methanol and acetate growth conditions.

bioRxiv · Apr 14, 2023Biochemistry

Evolutionary responses of a reef-building coral to climate change at the end of the last glacial maximum

J. Zhang, Z. T. Richards, A. A. S. Adam, C. X. Chan, C. Shinzato, J. Gilmour, L. Thomas, J. M. Strugnell, D. J. Miller, I. R. Cooke

This study examines the evolutionary responses of the coral Acropora digitifera to climate change by analyzing genetic divergence and adaptation mechanisms during the last glacial maximum.

bioRxiv · Apr 2, 2022Evolutionary Biology

Transcriptome of the coralline alga Calliarthron tuberculosum (Corallinales, Rhodophyta) reveals convergent evolution of a partial lignin biosynthesis pathway

J. Y. Xue, K. Hind, M. A. Lemay, A. Mcminigal, E. Jourdain, C. X. Chan, P. Martone

The paper identifies gene candidates in the monolignol biosynthesis pathway of the red alga Calliarthron tuberculosum and suggests convergent evolution with land plants.

bioRxiv · Mar 30, 2022Plant Biology

Nuclear genome of a pedinophyte pinpoints genomic innovation and streamlining in the green algae

S. I. Repetti, C. Iha, K. Uthanumallian, C. J. Jackson, Y. Chen, C. X. Chan, H. Verbruggen

This study presents the nuclear genome of a pedinophyte green alga, revealing genome streamlining and expansion in different lineages of Chlorophyta.

bioRxiv · Oct 4, 2021Evolutionary Biology

Tightly constrained genome reduction and relaxation of purifying selection during secondary plastid endosymbiosis

k. uthanumallian, C. Iha, S. I. Repetti, C. X. Chan, D. Bhattacharya, S. Duchene, H. Verbruggen

This study examines gene loss and selection changes in plastid genomes during secondary endosymbiosis in three lineages, finding constrained gene loss and temporary relaxation of purifying selection.

bioRxiv · May 27, 2021Evolutionary Biology

K-mer Similarity, Networks Of Microbial Genomes And Taxonomic Rank

G. Bernard, P. Greenfield, M. A. Ragan, C. X. Chan

The paper uses alignment-free methods to infer microbial phylogenomic networks and assesses the impact of ribosomal RNA genes and plasmids on evolutionary relationships.

bioRxiv · Apr 7, 2017Evolutionary Biology