Author

D. J. Miller

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 3 Biochemistry· 1 Bioengineering· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:chromatin & epigenetic regulation· 2 Assay:DNA methylation· 2 Organism:human· 2 Assay:proteomics· 2 Approach:statistical model· 2 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. A. S. Adam· 1 shared A. H. Baird· 1 shared A. M. Quattrini· 1 shared B. A. Schulman· 1 shared C. McFadden· 1 shared C. R. R. Grace· 1 shared C. Shinzato· 1 shared C. X. Chan· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 12 mutual co-author links

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1 shared paperEvolutionary Biology

A. A. S. Adam

Mutual co-authors in cluster

Author profile →

5 papers

Recent·Most cited

Direct laser writing of 3D electrodes on flexible substrates

M. A. Brown, K. M. Zappitelli, L. Singh, R. C. Yuan, M. A. Bemrose, V. Brogden, D. J. Miller, S. F. Cogan, T. J. Gardner

This paper introduces a method for fabricating high-aspect-ratio 3D microelectrode arrays on flexible substrates using direct laser writing and silicon thin-film processing for neural recording applications.

bioRxiv · Jun 7, 2022 · PreprintBioengineering

Evolutionary responses of a reef-building coral to climate change at the end of the last glacial maximum

J. Zhang, Z. T. Richards, A. A. S. Adam, C. X. Chan, C. Shinzato, J. Gilmour, L. Thomas, J. M. Strugnell, D. J. Miller, I. R. Cooke

This study examines the evolutionary responses of the coral Acropora digitifera to climate change by analyzing genetic divergence and adaptation mechanisms during the last glacial maximum.

bioRxiv · Apr 2, 2022Evolutionary Biology

An enhanced target-enrichment bait set for Hexacorallia provides phylogenomic resolution of the staghorn corals (Acroporidae) and close relatives.

P. F. Cowman, A. M. Quattrini, T. C. L. Bridge, G. J. Watkins-Colwell, N. Fadli, M. Grinblat, T. E. Roberts, C. McFadden, D. J. Miller, A. H. Baird

This paper develops an enhanced bait set for Hexacorallia to resolve the phylogeny of staghorn corals and their relatives using targeted enrichment and genomic data.

bioRxiv · Feb 25, 2020Evolutionary Biology

Early eukaryotic origins and metazoan elaboration of MAPR family proteins

E. Hehenberger, M. Eitel, S. A. V. Fortunato, D. J. Miller, P. J. Keeling, M. A. Cahill

This paper traces the evolutionary origins of MAPR family proteins, showing their presence in the common ancestor of Opisthokonta and their functional diversification in animals.

bioRxiv · Aug 20, 2019Evolutionary Biology

A Protein Engineering Approach for Uncovering Cryptic Ubiquitin-binding Sites: from a Ubiquitin-Variant Inhibitor of APC/C to K48 Chain Binding

E. R. Watson, C. R. R. Grace, W. Zhang, D. J. Miller, I. F. Davidson, J. R. Prabu, S. Yu, D. L. Bolhuis, E. T. Kulko, R. Vollrath, D. Haselbach, H. Stark, J.-M. Peters, N. G. Brown, S. S. Sidhu, B. A. Schulman

The paper identifies a cryptic ubiquitin-binding site on APC/C using ubiquitin variants, revealing its preference for K48-linked chains and demonstrating a method for uncovering such sites in large complexes.

bioRxiv · Jun 12, 2019 · PreprintBiochemistry