Author
New York University
Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.
5 papers
Recent·Most cited
Claudia Skok Gibbs, Christopher A. Jackson, Giuseppe-Antonio Saldi…·Richard Bonneau
The paper introduces Inferelator 3.0, a tool for inferring gene regulatory networks from single-cell data, showing improved performance on yeast and mouse brain datasets.
Sana Badri, Beth A. Carella, Priscillia Lhoumaud…·Jane A. Skok
The paper identifies new therapeutic targets in CRLF2-overexpressing B-ALL by analyzing TF-gene regulatory interactions using network inference and experimental validation.
Christopher A. Jackson, Dayanne M. Castro, Giuseppe-Antonio Saldi…·David Gresham
The paper develops a method to reconstruct gene regulatory networks from scRNA-seq data by barcoding gene deletion mutants in budding yeast across diverse environments.
Emily R. Miraldi, Maria V. Pokrovskii, Aaron Watters…·Richard Bonneau
The paper develops methods to infer transcriptional regulatory networks in Th17 cells using ATAC-seq and RNA-seq data, revealing new roles for transcription factors and their modules.
Dayanne M. Castro, Nicholas De Veaux, Emily R. Miraldi, Richard Bonneau
This study improves gene regulatory network inference by integrating multiple datasets using multitask learning, showing better network reconstruction and robustness to dataset heterogeneity.