Author

E. Abbondanzieri

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biophysics· 2

Signature Assays, Organisms & Methods

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Research Focus:chromatin & epigenetic regulation· 2 Approach:experimental assay· 2 Assay:DNA methylation· 1 Organism:E. coli· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1 Approach:statistical model· 1

Frequent Co-Authors

M. Ganji· 2 shared A. S. Meyer· 1 shared C. Dekker· 1 shared J. v. d. Torre· 1 shared M. Das· 1 shared N. Vtyurina· 1 shared S. H. Kim· 1 shared S. Shahu· 1 shared

Activity by Year

2018-2024 · peak 1/yr

Co-Author Collaboration Network

8 top collaborators · 16 mutual co-author links

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2 shared papersBiophysics

M. Ganji

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2 papers

Recent·Most cited

Bridging DNA contacts allow Dps from E. coli to condense DNA

S. Shahu, N. Vtyurina, M. Das, A. S. Meyer, M. Ganji, E. Abbondanzieri

This study investigates how DNA topology influences the formation of Dps-DNA complexes, showing that DNA supercoils and bridging contacts facilitate nucleation and stabilization of these structures.

bioRxiv · Jan 22, 2024 · PreprintBiophysics

DNA sequence encodes the position of DNA supercoils

S. H. Kim, M. Ganji, J. v. d. Torre, E. Abbondanzieri, C. Dekker

The paper shows DNA sequence encodes supercoil positions by pinning plectonemes, with intrinsic curvature over ~70 bp being key, and predicts plectonemes upstream of prokaryotic transcription start sites.

bioRxiv · Mar 1, 2018Biophysics