Author

J. v. d. Torre

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Biology Disciplines

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Approach:statistical model· 2 Research Focus:chromatin & epigenetic regulation· 1 Approach:experimental assay· 1 Assay:fluorescence / live-cell microscopy· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

C. Dekker· 2 shared B. Pradhan· 1 shared E. Abbondanzieri· 1 shared E. Kim· 1 shared I. F. Davidson· 1 shared J.-M. Peters· 1 shared M. Ganji· 1 shared R. Barth· 1 shared

Activity by Year

2018-2022 · peak 1/yr

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9 top collaborators · 21 mutual co-author links

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2 shared papersBiophysics

C. Dekker

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2 papers

Recent·Most cited

BiophysicsbioRxivPreprintAug 2, 2022

Can pseudotopological models for SMC-driven DNA loop extrusion explain the traversal of physical roadblocks bigger than the SMC ring size?

B. Pradhan, R. Barth, E. Kim…·C. Dekker

This study evaluates pseudotopological models of SMC-driven DNA loop extrusion and finds they conflict with experimental data on roadblock traversal.

DOI 10.1101/2022.08.02.502451

statistical model

𝕏 PostBluesky

BiophysicsbioRxivMar 1, 2018

DNA sequence encodes the position of DNA supercoils

S. H. Kim, M. Ganji, J. v. d. Torre…·C. Dekker

The paper shows DNA sequence encodes supercoil positions by pinning plectonemes, with intrinsic curvature over ~70 bp being key, and predicts plectonemes upstream of prokaryotic transcription start sites.

DOI 10.7554/elife.36557

fluorescence / live-cell microscopyexperimental assay

𝕏 PostBluesky