Author

E. Fogarty

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Cell Biology· 1 Ecology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 4 Research Focus:cell type annotation· 2 Organism:human· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Research Focus:clustering· 1 Research Focus:development & morphogenesis· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. M. Eren· 2 shared A. Shaiber· 2 shared B. Jabri· 2 shared F. Trigodet· 2 shared K. Lolans· 2 shared A. Giblin· 1 shared A. Murat Eren· 1 shared A. R. Watson· 1 shared

Activity by Year

2019-2022 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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2 shared papersMicrobiology

A. M. Eren

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

The diversity and functional capacity of microbes associated with coastal phototrophs

K. K. Miranda, B. L. Weigel, E. Fogarty, I. A. Veseli, A. Giblin, A. Murat Eren, C. A. Pfister

This paper characterizes the metabolic functions of microbes associated with coastal phototrophs, revealing their roles in nitrogen metabolism, vitamin biosynthesis, and carbon cycling.

bioRxiv · Jan 5, 2022 · PreprintEcology

High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes

F. Trigodet, K. Lolans, E. Fogarty, A. Shaiber, H. Morrison, L. Barreiro, B. Jabri, A. M. Eren

The paper benchmarks HMW DNA extraction methods for long-read sequencing of metagenomes, finding non-phenol-chloroform methods may yield better results.

bioRxiv · Mar 3, 2021Microbiology

Metabolic independence drives gut microbialcolonization and resilience in health and disease

A. R. Watson, J. Fuessel, I. Veseli, J. Z. DeLongchamp, M. Silva, F. Trigodet, K. Lolans, A. Shaiber, E. Fogarty, J. M. Runde, C. Quince, M. K. Yu, A. Soylev, H. G. Morrison, S. T. M. Lee, , A. M. Eren

This study investigates how metabolic independence influences gut microbial colonization and resilience in health and disease using fecal microbiota transplantation.

bioRxiv · Mar 2, 2021Microbiology

Notch signaling regulates Akap12 expression and primary cilia length during renal tubule morphogenesis.

M. Mukherjee, I. Ratnayake, M. Janga, E. Fogarty, S. Scheidt, J. deRiso, J. Grassmeyer, I. Chandrasekar, P. Ahrenkiel, R. Kopan, K. Surendran

The paper shows that Notch signaling regulates Akap12 expression and primary cilia length, affecting renal tubule morphogenesis and linking Notch defects to ciliopathies.

bioRxiv · Sep 9, 2019Cell Biology