Author

A. Shaiber

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 6

Signature Assays, Organisms & Methods

Click to filter · or open tag

Approach:experimental assay· 4 Organism:human· 4 Assay:metagenomics· 4 Approach:statistical model· 3 Research Focus:ecology & biodiversity· 2 Organism:bacteria (other)· 1 Research Focus:benchmarking· 1 Assay:bulk RNA-seq· 1

Frequent Co-Authors

A. M. Eren· 5 shared K. Lolans· 3 shared A. R. Watson· 2 shared B. Jabri· 2 shared C. Quince· 2 shared E. Fogarty· 2 shared F. Trigodet· 2 shared H. G. Morrison· 2 shared

Activity by Year

2017-2021 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 38 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

5 shared papersMicrobiology

A. M. Eren

Mutual co-authors in cluster

Author profile →

6 papers

Recent·Most cited

Systemic Tissue and Cellular Disruption from SARS-CoV-2 Infection revealed in COVID-19 Autopsies and Spatial Omics Tissue Maps

J. Park, J. Foox, T. Hether, D. Danko, S. Warren, Y. Kim, J. Reeves, D. J. Butler, C. Mozsary, J. Rosiene, A. Shaiber, E. Afshinnekoo, M. MacKay, Y. Bram, V. Chandar, , Schwar

This study identifies systemic tissue and cellular disruption from SARS-CoV-2 infection using autopsy and spatial omics data, showing tissue-specific damage and transcriptional changes.

bioRxiv · Mar 8, 2021 · PreprintMicrobiology

High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes

F. Trigodet, K. Lolans, E. Fogarty, A. Shaiber, H. Morrison, L. Barreiro, B. Jabri, A. M. Eren

The paper benchmarks HMW DNA extraction methods for long-read sequencing of metagenomes, finding non-phenol-chloroform methods may yield better results.

bioRxiv · Mar 3, 2021Microbiology

Metabolic independence drives gut microbialcolonization and resilience in health and disease

A. R. Watson, J. Fuessel, I. Veseli, J. Z. DeLongchamp, M. Silva, F. Trigodet, K. Lolans, A. Shaiber, E. Fogarty, J. M. Runde, C. Quince, M. K. Yu, A. Soylev, H. G. Morrison, S. T. M. Lee, , A. M. Eren

This study investigates how metabolic independence influences gut microbial colonization and resilience in health and disease using fecal microbiota transplantation.

bioRxiv · Mar 2, 2021Microbiology

Functional and genetic markers of niche partitioning among enigmatic members of the human oral microbiome

A. Shaiber, A. D. Willis, T. O. Delmont, S. Roux, L.-X. Chen, A. C. Schmid, M. Yousef, A. R. Watson, K. Lolans, O. C. Esen, S. T. Lee, N. Downey, H. G. Morrison, F. Dewhirst, J. L. Mark Welch, A. M. Eren

The paper analyzes oral microbiome metagenomes to identify niche partitioning among TM7 taxa, revealing distinct ecological and genetic patterns between plaque and tongue-associated TM7.

bioRxiv · Apr 29, 2020Microbiology

Accurate and Complete Genomes from Metagenomes

L.-X. Chen, K. Anantharaman, A. Shaiber, A. M. Eren, J. F. Banfield

The paper improves metagenome-assembled genomes (MAGs) by curating them to achieve complete, circularized genomes (CMAGs) using cumulative GC skew and other metrics.

bioRxiv · Oct 29, 2019Microbiology

Nitrogen-Fixing Populations Of Planctomycetes And Proteobacteria Are Abundant In The Surface Ocean

T. O. Delmont, C. Quince, A. Shaiber, O. C. Esen, S. T. M. Lee, S. Lucker, A. M. Eren

The paper identifies abundant non-cyanobacterial nitrogen-fixing bacteria in surface ocean waters, challenging previous assumptions about nitrogen sources.

bioRxiv · Apr 23, 2017Microbiology