Author

F. Trigodet

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 6

Signature Assays, Organisms & Methods

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Approach:experimental assay· 5 Research Focus:cell type annotation· 3 Organism:human· 3 Assay:bulk RNA-seq· 2 Assay:metagenomics· 2 Research Focus:benchmarking· 1 Organism:C. elegans· 1 Research Focus:differential expression· 1

Frequent Co-Authors

A. M. Eren· 4 shared K. Lolans· 3 shared A. Fiebig· 2 shared A. Shaiber· 2 shared B. Jabri· 2 shared E. Chang· 2 shared E. Fogarty· 2 shared A. Basu· 1 shared

Activity by Year

2021-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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4 shared papersMicrobiology

A. M. Eren

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Author profile →

6 papers

Recent·Most cited

Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient

A. Fiebig, M. Schnizlein, S. Pena-Rivera, F. Trigodet, A. Dubey, M. Hennessy, A. Basu, S. Pott, S. Dalal, D. Rubin, M. Sogin, A. M. Eren, E. Chang, S. Crosson

This study identifies genes and pathways in B. fragilis that affect its fitness in bile acids, using a barcoded mutant library and transcriptomic analysis.

bioRxiv · May 11, 2023 · PreprintMicrobiology

Genetic and physiological insights into the diazotrophic activity of a non-cyanobacterial marine diazotroph

A. Joublin-Delavat, K. Touahri, P. Cretin, A. Morot, S. Rodrigues, B. Jesus, F. Trigodet, F. Delavat

This study investigates the genetic and physiological traits of a marine non-cyanobacterial diazotroph, Vibrio diazotrophicus, revealing its nitrogen fixation capabilities and biofilm formation under diazotrophic conditions.

bioRxiv · Jul 13, 2022Microbiology

Dynamic genetic adaptation of Bacteroides thetaiotaomicron murine gut colonization

M. Zhang, M. Kennedy, O. DeLeon, J. Bissell, F. Trigodet, K. Lolans, S. Temelkova, K. T. Carroll, A. Fiebig, A. M. Deutschbauer, A. M. Sidebottom, C. S. Henry, P. A. Rice, J. Bergelson, E. Chang

This study tracks genetic and metabolic changes in Bacteroides thetaiotaomicron during gut colonization, showing shifting gene usage and highlighting the importance of carbohydrate metabolism for long-term persistence.

bioRxiv · Feb 23, 2022 · PreprintMicrobiology

The mosquito microbiome includes habitat-specific but rare symbionts

H. Schrieke, L. Maignien, F. Constancias, F. Trigodet, S. Chakloute, I. Rakotoarivony, A. Marie, G. L'Ambert, P. Makoundou, N. Pages, A. M. Eren, M. Weill, M. Sicard, J. Reveillaud

This study identifies habitat-specific rare symbionts in mosquito microbiomes using high-resolution oligotyping, revealing microdiversity and co-occurring bacterial variants.

bioRxiv · Sep 24, 2021Microbiology

High molecular weight DNA extraction strategies for long-read sequencing of complex metagenomes

F. Trigodet, K. Lolans, E. Fogarty, A. Shaiber, H. Morrison, L. Barreiro, B. Jabri, A. M. Eren

The paper benchmarks HMW DNA extraction methods for long-read sequencing of metagenomes, finding non-phenol-chloroform methods may yield better results.

bioRxiv · Mar 3, 2021Microbiology

Metabolic independence drives gut microbialcolonization and resilience in health and disease

A. R. Watson, J. Fuessel, I. Veseli, J. Z. DeLongchamp, M. Silva, F. Trigodet, K. Lolans, A. Shaiber, E. Fogarty, J. M. Runde, C. Quince, M. K. Yu, A. Soylev, H. G. Morrison, S. T. M. Lee, , A. M. Eren

This study investigates how metabolic independence influences gut microbial colonization and resilience in health and disease using fecal microbiota transplantation.

bioRxiv · Mar 2, 2021Microbiology