Author

E. Trucchi

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Evolutionary Biology· 8 Ecology· 2 Scientific Communication & Education· 1

Signature Assays, Organisms & Methods

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Approach:statistical model· 6 Research Focus:chromatin & epigenetic regulation· 3 Research Focus:ecology & biodiversity· 3 Assay:bulk RNA-seq· 2 Assay:DNA methylation· 2 Approach:experimental assay· 2 Organism:multiple species· 2 Organism:non-human primate· 2

Frequent Co-Authors

C. Le Bohec· 5 shared F. A. N. Fernandes· 4 shared F. Pirri· 2 shared G. Bertorelle· 2 shared J. Stefka· 2 shared L. Ancona· 2 shared L. Zane· 2 shared M. Benoiste· 2 shared

Activity by Year

2016-2023 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 22 mutual co-author links

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5 shared papersEvolutionary Biology

C. Le Bohec

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Author profile →

11 papers

Recent·Most cited

Gene expression shifts in Emperor penguin adaptation to the extreme Antarctic environment

J. R. Paris, F. A. N. Fernandes, F. Pirri, S. Greco, M. Gerdol, A. Pallavicini, M. Benoiste, C. Cornec, L. Zane, B. Haas, C. Le Bohec, E. Trucchi

This study compares gene expression in Emperor and King penguins to identify adaptations to extreme Antarctic environments, finding key roles for muscle and liver in metabolism and regulatory shifts in the brain.

bioRxiv · Nov 29, 2023Evolutionary Biology

Gene expression is the main driver of purifying selection in large penguin populations

E. Trucchi, P. Massa, F. Giannelli, T. Latrille, F. A. N. Fernandes, L. Ancona, N. C. Stenseth, J. Ferrer Obiol, J. Paris, G. Bertorelle, C. Le Bohec

The paper shows gene expression drives purifying selection in penguin populations, with highly expressed genes experiencing stronger selection pressures.

bioRxiv · Aug 8, 2023 · PreprintEvolutionary Biology

RFIDeep: Unfolding the Potential of Deep Learning forRadio-Frequency Identification

G. Bardon, R. Cristofari, A. Winterl, T. Barracho, M. Benoiste, C. Ceresa, N. Chatelain, J. Courtecuisse, F. A. N. Fernandes, M. Gauthier-Clerc, J.-P. Gendner, Y. Handrich, A. Houstin, A. Krellenstein, N. Lecomte, , C. Le Bohec

RFIDeep uses deep learning to analyze RFID mark-recapture data and accurately determine breeding status, phenology, and success in seabirds.

bioRxiv · Mar 25, 2023Ecology

Historical dispersal and host-switching formed the evolutionary history of a globally distributed multi-host parasite - the Ligula intestinalis species complex

M. Nazarizadeh, M. Novakova, G. Loot, N. P. Gabagambi, F. Fatemizadeh, O. Osano, B. Presswell, R. Poulin, Z. Vital, T. Scholz, A. Halajian, E. Trucchi, P. Kocova, J. Stefka

This study investigates the evolutionary history of the tapeworm Ligula intestinalis by analyzing mtDNA and SNP data, revealing multiple lineages and the role of historical dispersal and host-switching in its diversification.

bioRxiv · Oct 12, 2022Evolutionary Biology

The history and organization of the Workshop on Population and Speciation Genomics

J. M. I. Barth, S. Handley, D. Kintzl, G. Leonard, M. Malinsky, M. Matschiner, B. S. Meyer, W. Salzburger, J. Stefka, E. Trucchi

The paper describes the organization and success factors of a long-running bioinformatics workshop on population and speciation genomics, highlighting its educational impact and scientific outcomes.

bioRxiv · May 14, 2022Scientific Communication & Education

Selection-driven adaptation to the extreme Antarctic environment in the Emperor penguin

F. Pirri, L. Ometto, S. Fuselli, F. A. N. Fernandes, L. Ancona, C. Le Bohec, L. Zane, E. Trucchi

This study identifies genomic signatures of selection in Emperor and King penguins to determine if Emperor penguin's cold adaptation evolved from a more King penguin-like ancestor.

bioRxiv · Dec 14, 2021Evolutionary Biology

Recurrent allopolyploidization events diversify eco-physiological traits in marsh orchids

T. M. Wolfe, F. Balao, E. Trucchi, G. Bachmann, W. Gu, J. Baar, M. Hedren, W. Weckwerth, A. R. Leitch, O. Paun

This study shows that recurrent allopolyploidy in marsh orchids leads to distinct eco-physiological traits adapted to different environments.

bioRxiv · Aug 28, 2021Evolutionary Biology

Unveiling diffusion pattern and structural impact of the most invasive SARS-CoV-2 spike mutation

E. Trucchi, P. Gratton, F. Mafessoni, S. Motta, F. Cicconardi, G. Bertorelle, I. D'Annessa, D. Di Marino

This study links the spread of the SARS-CoV-2 G614 spike variant to structural changes that enhance transmission and provides structural insights for drug design.

bioRxiv · May 14, 2020Evolutionary Biology

Climate-driven range shifts in fragmented ecosystems

R. Cristofari, X. Liu, F. Bonadonna, Y. Cherel, P. Pistorius, Y. Le Maho, V. Raybaud, N. C. Stenseth, C. Le Bohec, E. Trucchi

The paper identifies vulnerable areas and cold refugia for a top-predator in fragmented ecosystems by integrating genomic, ecological, behavioural, and environmental models.

Nature Climate Change · Mar 1, 2018Peer-reviewedEvolutionary Biology

Ecological plant epigenetics: Evidence from model and non-model species, and the way forward

C. L. Richards, C. Alonso, C. Becker, O. Bossdorf, E. Bucher, M. Colome-Tatche, W. Durka, J. Engelhardt, B. Gaspar, A. Gogol-Doring, I. Grosse, T. P. van Gurp, K. Heer, I. Kronholm, C. Lampei, , K. J. F. Verhoeven

The paper reviews epigenetic contributions to plant ecology and proposes integrating model-species research with non-model species studies to better understand ecological processes.

bioRxiv · Apr 25, 2017Ecology

RADpainter and fineRADstructure: population inference from RADseq data

M. Malinsky, E. Trucchi, D. Lawson, D. Falush

The paper introduces RADpainter and fineRADstructure to infer population structure from RADseq data, demonstrating their effectiveness with example datasets.

bioRxiv · Jun 16, 2016Evolutionary Biology