Author

F. Koch

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Ecology· 1 Physiology· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Assay:bulk RNA-seq· 2 Research Focus:cell-cell communication· 2 Assay:proteomics· 2 Approach:statistical model· 2 Organism:bacteria (other)· 1 Research Focus:cancer & tumor microenvironment· 1 Research Focus:cell type annotation· 1

Frequent Co-Authors

A. Aguilar-Pimentel· 1 shared A. Azad· 1 shared A. F. Tanzim· 1 shared A. Hoeflich· 1 shared A. Imhof· 1 shared A. Kuhla· 1 shared A. Mueller-Eigner· 1 shared A. Penesyan· 1 shared

Activity by Year

2020-2024 · peak 3/yr

Co-Author Collaboration Network

10 top collaborators · 24 mutual co-author links

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1 shared paperPhysiology

A. Aguilar-Pimentel

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Author profile →

5 papers

Recent·Most cited

Many weak and few strong links: The importance of interaction strength distributions for stabilising patterns in competition networks

F. Koch, A.-M. Neutel, D. K. Barnes, K. T. Allhoff

The paper shows that skewed interaction strength distributions, not uniform ones, are necessary for hierarchy to stabilize ecological competition networks.

bioRxiv · Jan 25, 2024 · PreprintEcology

Protein secretion zones within the Gram-positive cell wall

M. Strach, F. Koch, S. Fiedler, K. Liebeton, P. L. Graumann

The paper investigates protein secretion in Gram-positive bacteria, identifying 'secretion zones' where proteins like AmyE are secreted through active transport and passive diffusion.

bioRxiv · Sep 9, 2022 · PreprintMicrobiology

A drop-on-demand bioprinting approach to spatially arrange multiple cell types and monitor their cell-cell interactions towards vascularization based on endothelial cells and mesenchymal stem cells

J. Weygant, F. Koch, K. Adam, K. Troendle, R. Zengerle, G. Finkenzeller, S. Kartmann, P. Koltay, S. Zimmermann

This paper introduces a drop-on-demand bioprinting method to study cell-cell interactions in 3D constructs, showing how spacing and cell type combinations affect vascularization.

bioRxiv · Jul 20, 2022Bioengineering

dSeqSb: A systems biology approach to decipher dynamics of 1 host-pathogen interactions using temporal dual RNA-seq data

M. Dinarvand, F. Koch, D. A. Mouiee, K. Vuong, A. Vijayan, A. F. Tanzim, A. Azad, A. Penesyan, N. Castano-Rodriguez, F. Vafaee

dRNASb analyzes temporal dual RNA-seq data to uncover host-pathogen gene interactions and key transcripts involved in infection processes.

bioRxiv · Feb 28, 2022Microbiology

Dietary intervention improves health metrics and life expectancy of the genetically obese DU6 (Titan) mouse

A. Mueller-Eigner, A. Sanz-Moreno, I. de-Diego, A. Venkateswaran Venkatasubramani, M. Langhammer, R. Gerlini, B. Rathkolb, A. Aguilar-Pimentel, T. Klein-Rodewald, J. Calzada-Wack, L. Becker, S. Palma-Vera, B. Gille, I. Forne, A. Imhof, , S. Peleg

The study characterizes the Titan mouse as a model for metabolically unhealthy obesity and shows that dietary intervention improves its health and extends lifespan.

bioRxiv · May 11, 2020Physiology