Author

F. Vafaee

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Pathology· 2 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:bulk RNA-seq· 3 Organism:human· 3 Approach:statistical model· 3 Approach:deep learning· 2 Research Focus:differential expression· 2 Research Focus:cell-cell communication· 1 Approach:experimental assay· 1 Research Focus:gene regulatory network inference· 1

Frequent Co-Authors

A. Adhikari· 1 shared A. Aggarwal· 1 shared A. Azad· 1 shared A. Capraro· 1 shared A. Chen· 1 shared A. Cohen· 1 shared A. F. Tanzim· 1 shared A. Jaffe· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 13 mutual co-author links

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1 shared paperImmunology

A. Adhikari

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

dSeqSb: A systems biology approach to decipher dynamics of 1 host-pathogen interactions using temporal dual RNA-seq data

M. Dinarvand, F. Koch, D. A. Mouiee, K. Vuong, A. Vijayan, A. F. Tanzim, A. Azad, A. Penesyan, N. Castano-Rodriguez, F. Vafaee

dRNASb analyzes temporal dual RNA-seq data to uncover host-pathogen gene interactions and key transcripts involved in infection processes.

bioRxiv · Feb 28, 2022Microbiology

Ageing impairs the airway epithelium defence response to SARS-CoV-2

A. Capraro, S. L. Wong, A. Adhikari, K. M. Allan, H. R. Patel, L. Zhong, M. Raftery, A. Jaffe, M. Yeang, A. Aggarwal, L. Wu, E. Pandzic, R. M. Whan, S. Turville, O. Vittorio, , S. A. Waters

This study investigates age-related differences in the nasal epithelium's response to SARS-CoV-2, finding that older adults have impaired host defense and lower viral load due to reduced host machinery expression.

bioRxiv · Apr 5, 2021 · PreprintImmunology

Lipidome profiles of plasma microvesicles differ in experimental cerebral malaria, compared to malaria without neurological complications

A. M. Batarseh, F. Vafaee, E. Hosseini-Beheshti, A. Chen, A. Cohen, A. Juillard, N. H. Hunt, M. Mariani, T. Mitchell, G. E. R. Grau

The paper compares lipidome profiles of plasma microvesicles in experimental cerebral malaria and non-CM malaria, finding distinct lipid changes associated with CM.

bioRxiv · Jul 28, 2020 · PreprintPathology

Deep sequencing of circulating exosomal microRNA allows non-invasive glioblastoma diagnosis

S. Ebrahimkhani, F. Vafaee, S. Hallal, H. Wei, M. Lee, P. Young, L. Satgunaseelan, B. Shivalingam, C. Suter, M. Buckland, K. Kaufman

This study identifies a seven-miRNA signature from serum exosomal microRNA that accurately diagnoses glioblastoma with perfect accuracy in validation cohorts.

bioRxiv · Sep 4, 2018Pathology