Author

A. Vijayan

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Plant Biology· 4 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:imaging· 4 Research Focus:cell type annotation· 3 Approach:deep learning· 3 Organism:Arabidopsis· 2 Research Focus:clustering· 2 Approach:experimental assay· 2 Organism:mouse· 2 Organism:plant (other)· 2

Frequent Co-Authors

K. Schneitz· 4 shared A. Kreshuk· 3 shared A. Wolny· 3 shared L. Cerrone· 3 shared R. S. Smith· 3 shared R. Tofanelli· 3 shared S. Strauss· 3 shared F. Hamprecht· 2 shared

Activity by Year

2020-2024 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 45 mutual co-author links

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4 shared papersPlant Biology

K. Schneitz

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Author profile →

6 papers

Recent·Most cited

A deep learning-based toolkit for 3D nuclei segmentation and quantitative analysis in cellular and tissue context

A. Vijayan, T. A. Mody, Q. Yu, A. Wolny, L. Cerrone, S. Strauss, M. Tsiantis, R. S. Smith, F. Hamprecht, A. Kreshuk, K. Schneitz

The paper introduces computational tools for 3D nuclei segmentation and analysis, showing variations in nuclear-to-cell volume ratios across tissues.

Development · Jul 18, 2024Peer-reviewedPlant Biology

dSeqSb: A systems biology approach to decipher dynamics of 1 host-pathogen interactions using temporal dual RNA-seq data

M. Dinarvand, F. Koch, D. A. Mouiee, K. Vuong, A. Vijayan, A. F. Tanzim, A. Azad, A. Penesyan, N. Castano-Rodriguez, F. Vafaee

dRNASb analyzes temporal dual RNA-seq data to uncover host-pathogen gene interactions and key transcripts involved in infection processes.

bioRxiv · Feb 28, 2022Microbiology

The annotation and analysis of complex 3D plant organs using 3DCoordX

A. Vijayan, S. Strauss, R. Tofanelli, T. A. Mody, K. Lee, M. Tsiantis, R. S. Smith, K. Schneitz

The paper develops 3DCoordX, a tool for spatially annotating cells in 3D plant organs, revealing new insights into growth patterns across species.

bioRxiv · Nov 20, 2021Plant Biology

Ad26.COV2.S-elicited immunity protects against G614 spike variant SARS-CoV-2 infection in Syrian hamsters and does not enhance respiratory disease in challenged animals with breakthrough infection after sub-optimal vaccine dosing

J. E. M. van der Lubbe, S. K. Rosendahl Huber, A. Vijayan, L. Dekking, E. van Huizen, J. Vreugdenhil, Y. Choi, M. R. M. Baert, K. Feddes-de Boer, A. Izquierdo Gil, M. van Heerden, T. J. Dalebout, S. K. Myeni, M. Kikkert, E. J. Snijder, , F. Wegmann

This study shows that a single dose of Ad26.COV2.S vaccine protects Syrian hamsters from G614 SARS-CoV-2 infection and prevents VAERD even with suboptimal immunity.

bioRxiv · Jan 8, 2021 · PreprintImmunology

A digital 3D reference atlas reveals cellular growth patterns shaping the Arabidopsis ovule

A. Vijayan, R. Tofanelli, S. Strauss, L. Cerrone, A. Wolny, J. Strohmeier, A. Kreshuk, F. Hamprecht, R. S. Smith, K. Schneitz

The paper creates a 3D digital atlas of Arabidopsis ovule development, revealing cellular growth patterns and new functions in morphogenesis.

bioRxiv · Sep 19, 2020Plant Biology

Accurate And Versatile 3D Segmentation Of Plant Tissues At Cellular Resolution

A. Wolny, L. Cerrone, A. Vijayan, R. Tofanelli, A. V. Barro, M. Louveaux, C. Wenzl, S. Steigleder, C. Pape, A. Bailoni, S. Duran-Nebreda, G. Bassel, J. U. Lohmann, F. A. Hamprecht, K. Schneitz, , A. Kreshuk

PlantSeg provides a deep learning-based pipeline for accurate 3D segmentation of plant tissues into individual cells across various developmental contexts.

bioRxiv · Jan 17, 2020Plant Biology