Author

Fan Feng

Vanderbilt University Medical Center

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Same name, identified by ORCID

Biology Disciplines

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Bioinformatics· 2 Genomics· 1 Plant Biology· 1

Signature Assays, Organisms & Methods

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Assay:scRNA-seq· 3 Research Focus:benchmarking· 2 Research Focus:database / resource· 2 Organism:human· 2 Approach:statistical model· 2 Research Focus:cell type annotation· 1 Assay:ChIP-seq· 1 Assay:CITE-seq· 1

Frequent Co-Authors

Marcela BriššováiD· 3 shared Stephen C.J. ParkeriD· 3 shared Ha T.H. VuiD· 2 shared Jean‐Philippe CartailleriD· 2 shared Jie Liu· 2 shared Kyle J. GaultoniD· 2 shared Shristi ShresthaiD· 2 shared Thomas S. R. BateiD· 2 shared

Activity by Year

2025-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 41 mutual co-author links

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3 shared papersBioinformatics

Marcela BriššováORCID

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Author profile →

4 papers

Recent·Most cited

PanKbase Integrated Single-Cell Map: A Comprehensive Atlas of Human Pancreatic Islets

Ha T.H. Vu, Han Sun, Parul Kudtarkar, Seth A. Sharp, LIZA BRUSMAN, FAN FENG, Thomas S. R. Bate, Julie A. Jurgens, Yiqun Wang, Yuanhao Huang, Runbo Mao, Sierra Corban, Amanda K. Huber, Alex Shilin, Ying Sun, , Stephen C.J. Parker

The paper integrates multiple scRNA-seq datasets to create a comprehensive atlas of human pancreatic islets, identifying 13 cell populations and providing a resource for diabetes research.

bioRxiv · Jul 7, 2026 · PreprintGenomics

The Human Pancreas Cell Atlas defines a healthy reference framework for disease contextualization and translational benchmarking

Shrey Parikh, Daniel C. Strobl, Sara Jiménez, Julia Beckmann, Lucas Arnoldt, Eljas Roellin, Valerie Vandenbempt, Michael Sterr, Mandala Aije, Ha T.H. Vu, Rebecca L. Melton, Jie Liu, FAN FENG, JP CARTAILLER, Kyle J. Gaulton, , Fabian Joachim Theis

The paper constructs a healthy human pancreas reference atlas to contextualize disease states and benchmark models.

bioRxiv · Jun 25, 2026 · PreprintBioinformatics

CelLink: integrating single-cell multi-omics data with weak feature linkage and imbalanced cell populations

Xin Luo, Yuanhao Huang, Haoxuan Zeng, Yicheng Tao, Xinyu Bao, Fan Feng, Alexander L. Hopkirk, Thai H. Pham, Thomas S. R. Bate, Diane C. Saunders, Peter Orchard, CASSIE ROBERTSON, Shristi Shrestha, Jeffrey M. Spraggins, Jean‐Philippe Cartailler, , Jie Liu

CelLink integrates single-cell multi-omics data by addressing weak feature linkage and imbalanced cell populations, outperforming existing methods in imputation accuracy and cell subtype annotation.

Nucleic Acids Research · Oct 29, 2025Peer-reviewedBioinformatics

Transcription factor binding site divergence across maize inbred lines drives transcriptional and phenotypic variation

Mary Galli, Zongliang Chen, Tara Ghandour, Amina Chaudhry, Jason Gregory, Fan Feng, Miaomiao Li, Nathaniel Schleif, Xuan Zhang, Yinxin Dong, Gaoyuan Song, Justin W. Walley, George S. Chuck, Clinton Whipple, Heidi F. Kaeppler, , Andrea Gallavotti

The paper identifies TF binding site divergence between maize inbred lines and links it to gene expression and phenotypic variation.

Nature Plants · Jun 12, 2025Peer-reviewedPlant Biology