Author

Julia Beckmann

Helmholtz Munich

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Bioinformatics· 2

Signature Assays, Organisms & Methods

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Organism:human· 2 Research Focus:benchmarking· 1 Research Focus:cell type annotation· 1 Research Focus:cell-cell communication· 1 Approach:graph neural network· 1 Organism:mouse· 1 Assay:scRNA-seq· 1 Research Focus:spatial domain detection· 1

Frequent Co-Authors

Fabian Joachim TheisiD· 2 shared Sara JiméneziD· 2 shared Anna Christina SchaariD· 1 shared Christian ConradiD· 1 shared Daniel C. StrobliD· 1 shared Diego BalboaiD· 1 shared Eljas RoelliniD· 1 shared FAN FENG· 1 shared

Activity by Year

2026-2026 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 30 mutual co-author links

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2 shared papersBioinformatics

Fabian Joachim TheisORCID

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2 papers

Recent·Most cited

The Human Pancreas Cell Atlas defines a healthy reference framework for disease contextualization and translational benchmarking

Shrey Parikh, Daniel C. Strobl, Sara Jiménez, Julia Beckmann, Lucas Arnoldt, Eljas Roellin, Valerie Vandenbempt, Michael Sterr, Mandala Aije, Ha T.H. Vu, Rebecca L. Melton, Jie Liu, FAN FENG, JP CARTAILLER, Kyle J. Gaulton, , Fabian Joachim Theis

The paper constructs a healthy human pancreas reference atlas to contextualize disease states and benchmark models.

bioRxiv · Jun 25, 2026 · PreprintBioinformatics

InterScale reveals multi-scale cellular interaction programs in spatial transcriptomics

Francesca Drummer, Sara Jiménez, Federico Di Marco, Anna Christina Schaar, Tancredi Massimo Pentimalli, Julia Beckmann, Nikolaus Rajewsky, Fabian Joachim Theis

InterScale models both local and global cellular interactions in spatial transcriptomics data, revealing spatially restricted differentiation programs and disease-associated tissue remodeling.

bioRxiv · May 11, 2026 · PreprintBioinformatics