Author

J. A. Nakamoto

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 2 Bioengineering· 1 Biophysics· 1

Signature Assays, Organisms & Methods

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Approach:experimental assay· 3 Research Focus:protein folding & dynamics· 3 Organism:bacteria (other)· 2 Assay:proteomics· 2 Approach:biophysical modeling· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Approach:deep learning· 1

Frequent Co-Authors

P. Milon· 3 shared A. E. Sanchez-Castro· 1 shared A. Egorov· 1 shared A. Elofsson· 1 shared A. Fabbretti· 1 shared A. Garcia-Pino· 1 shared A. L. Konevega· 1 shared A. Rustamova· 1 shared

Activity by Year

2019-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

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3 shared papersMicrobiology

P. Milon

Mutual co-authors in cluster

Author profile →

4 papers

Recent·Most cited

MicrobiologybioRxivPreprintMar 22, 2023

The structural basis of hyperpromiscuity in a core combinatorial network of Type II toxin-antitoxin and related phage defence systems

K. Ernits, C. K. Saha, T. Brodiazhenko…·G. C. Atkinson

The paper identifies a core combinatorial network of Type II toxin-antitoxin systems, reveals their structural basis for hyperpromiscuity, and validates new TA systems with functional annotations.

DOI 10.1101/2023.03.22.533649

protein structuredeep learning

𝕏 PostBluesky

MicrobiologybioRxivPreprintJan 19, 2021

(p)ppGpp inhibits 70S ribosome formation in Staphylococcus aureus by impeding GTPase-ribosome interactions

D. J. Bennison, J. A. Nakamoto, T. D. Craggs…·R. M. Corrigan

This study shows (p)ppGpp inhibits 70S ribosome formation in Staphylococcus aureus by reducing RA-GTPase-ribosome interactions through inducing the OFF-state conformation.

DOI 10.1101/2021.01.19.427108

bacteria (other)proteomics

𝕏 PostBluesky

BiophysicsbioRxivPreprintMar 16, 2019

The complete, functional and dynamic cycle of the bacterial Initiation Factor 3

J. A. Nakamoto, R. Spurio, A. L. Konevega…·P. Milon

This study reveals the kinetic mechanisms and conformational changes of bacterial IF3 during translation initiation.

DOI 10.1101/579326

bacteria (other)structural biology

𝕏 PostBluesky

BioengineeringbioRxivJan 23, 2019

DNA aptamers for the recognition of HMGB1 from Plasmodium falciparum

D. F. Joseph, J. A. Nakamoto, O. A. Garcia Ruiz…·P. Milon

This study identifies HMGB1 as a potential biomarker for malaria and develops DNA aptamers for its detection, showing high binding affinity and specificity.

DOI 10.1371/journal.pone.0211756

plant (other)proteomics

𝕏 PostBluesky