Author

J. Adolf-Bryfogle

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Biochemistry· 1 Bioengineering· 1 Immunology· 1 Microbiology· 1

Signature Assays, Organisms & Methods

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Assay:protein structure· 4 Approach:experimental assay· 2 Organism:bacteria (other)· 1 Research Focus:cell signaling & trafficking· 1 Research Focus:cell type annotation· 1 Research Focus:database / resource· 1 Approach:deep learning· 1 Research Focus:drug response / drug discovery· 1

Frequent Co-Authors

R. L. Dunbrack· 2 shared W. R. Schief· 2 shared B. D. Weitzner· 1 shared B. Faezov· 1 shared B. G. Pierce· 1 shared C. D. Bahl· 1 shared C. M. Burke· 1 shared D. R. Madden· 1 shared

Activity by Year

2018-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 15 mutual co-author links

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2 shared papersImmunology

R. L. Dunbrack

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Author profile →

4 papers

Recent·Most cited

A penultimate classification of canonical antibody CDR conformations

S. Kelow, B. Faezov, Q. Xu, M. I. Parker, J. Adolf-Bryfogle, R. L. Dunbrack

The paper updates the classification of antibody CDR conformations using improved clustering methods and electron density validation, identifying new clusters and retiring outdated ones.

bioRxiv · Oct 12, 2022 · PreprintImmunology

Biochemical and Structural Characterization of Two Cif-Like Epoxide Hydrolases from Burkholderia cenocepacia

N. M. Taher, K. L. Hvorecny, C. M. Burke, M. S. A. Gilman, G. E. Heussler, J. Adolf-Bryfogle, C. D. Bahl, G. A. O'Toole, D. R. Madden

This study characterizes two Cif-like epoxide hydrolases from Burkholderia cenocepacia, revealing their biochemical properties and structural differences.

bioRxiv · Jan 20, 2021Biochemistry

CoV3D: A database and resource for high resolution coronavirus protein structures

R. Gowthaman, J. D. Guest, R. Yin, J. Adolf-Bryfogle, W. R. Schief, B. G. Pierce

CoV3D provides a database of coronavirus protein structures, including spike glycoprotein complexes, for vaccine and therapeutic design.

bioRxiv · May 12, 2020Microbiology

RosettaAntibodyDesign (RAbD): A General Framework for Computational Antibody Design

J. Adolf-Bryfogle, O. Kalyuzhniy, M. Kubitz, B. D. Weitzner, X. Hu, Y. Adachi, W. R. Schief, R. L. Dunbrack

This paper introduces RosettaAntibodyDesign (RAbD), a computational framework for antibody design that improves affinity by redesigning CDRs using structural and sequence-based methods.

bioRxiv · Apr 12, 2018Bioengineering