Author

J. C. Burckhardt

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

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Microbiology· 3

Signature Assays, Organisms & Methods

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Research Focus:cell-cell communication· 2 Research Focus:differential expression· 2 Organism:human· 2 Assay:metagenomics· 2 Organism:bacteria (other)· 1 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:clustering· 1

Frequent Co-Authors

C. Tropini· 3 shared D. M. Pepin· 2 shared K. M. Ng· 2 shared B. Nguyen· 1 shared C. A. Clayton· 1 shared D. H. Y. Chong· 1 shared H. Ghezzi· 1 shared J. Nguyen· 1 shared

Activity by Year

2022-2023 · peak 2/yr

Co-Author Collaboration Network

10 top collaborators · 29 mutual co-author links

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3 shared papersMicrobiology

C. Tropini

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Author profile →

3 papers

Recent·Most cited

MicrobiologybioRxivDec 18, 2023

PUPpy: a primer design pipeline for substrain-level microbial detection and absolute quantification.

H. Ghezzi, M. Y. Fan, K. M. Ng…·C. Tropini

PUPpy designs taxon-specific primers for substrain-level microbial detection and absolute quantification, outperforming 16S rRNA and shotgun sequencing in defined communities.

DOI 10.1128/msphere.00360-24

bacteria (other)metagenomics

𝕏 PostBluesky

MicrobiologybioRxivPreprintOct 9, 2022

Gut commensal Enterocloster species host inoviruses that are secreted in vitro and in vivo.

J. C. Burckhardt, D. H. Y. Chong, N. Pett, C. Tropini

This study identifies and characterizes inoviruses secreted by gut commensal Enterocloster species in vitro and in vivo, showing osmotic regulation of secretion.

DOI 10.1101/2022.10.09.511496

humanmetagenomics

𝕏 PostBluesky

MicrobiologybioRxivAug 31, 2022

Single-strain behavior predicts responses to environmental pH and osmolality in the gut microbiota.

K. M. Ng, S. Pannu, S. Liu…·C. Tropini

This study predicts microbiota responses to environmental pH and osmolality by analyzing bacterial growth under controlled conditions and identifying predictive genes and pathways.

DOI 10.1128/mbio.00753-23

humanbulk RNA-seq

𝕏 PostBluesky