Author

J. Lalli

Listed by name: these papers carry no ORCID for this author, so different people with the same name may be mixed together.

Biology Disciplines

Click to filter author papers

Microbiology· 3

Signature Assays, Organisms & Methods

Click to filter · or open tag

Research Focus:differential expression· 2 Research Focus:host-pathogen & immune response· 2 Organism:human· 2 Assay:bulk RNA-seq· 1 Research Focus:cell type annotation· 1 Research Focus:chromatin & epigenetic regulation· 1 Approach:deep learning· 1 Approach:experimental assay· 1

Frequent Co-Authors

K. M. Braun· 2 shared T. C. Friedrich· 2 shared Y. Kawaoka· 2 shared A. K. Haj· 1 shared A. Weiler· 1 shared C. M. Crooks· 1 shared C. Newman· 1 shared D. Dudley· 1 shared

Activity by Year

2017-2022 · peak 1/yr

Co-Author Collaboration Network

10 top collaborators · 19 mutual co-author links

Click any collaborator node to inspect or filter shared papers

Focal author (center)Selected co-authorORCID co-authorUnlinked name

Curved chords = mutual co-authorship

2 shared papersMicrobiology

K. M. Braun

Mutual co-authors in cluster

Author profile →

3 papers

Recent·Most cited

Avian H7N9 influenza viruses are evolutionarily constrained by stochastic processes during replication and transmission in mammals

K. M. Braun, L. A. Haddock, C. M. Crooks, G. L. Barry, J. Lalli, G. Neumann, T. Watanabe, M. Imai, S. Yamayoshi, M. Ito, Y. Kawaoka, T. C. Friedrich

This study shows that H7N9 avian influenza viruses face strong evolutionary constraints during mammalian transmission, making human adaptation unlikely without rare, stochastic events.

bioRxiv · Apr 12, 2022Microbiology

Limited SARS-CoV-2 diversity within hosts and following passage in cell culture

G. K. Moreno, K. M. Braun, P. J. Halfmann, T. M. Prall, K. K. Riemersma, A. K. Haj, J. Lalli, K. R. Florek, T. C. Friedrich, Y. Kawaoka, D. H. O'Connor

This study analyzes SARS-CoV-2 within-host diversity using metagenomic sequencing and finds low genetic variation with limited evidence of positive selection in clinical and cell culture samples.

bioRxiv · Apr 20, 2020 · PreprintMicrobiology

Infection via mosquito bite alters Zika virus replication kinetics in rhesus macaques

D. Dudley, C. Newman, J. Lalli, L. Stewart, M. Koening, A. Weiler, M. Semler, G. Barry, K. Zarbock, M. Mohns, M. Breitbach, N. Schultz-Darken, E. Peterson, W. Newton, E. Mohr, , M. Aliota

This study compares ZIKV replication kinetics and tissue distribution in rhesus macaques infected via mosquito bite versus subcutaneous inoculation, finding delayed viral peak and restricted tissue distribution in mosquito-infected animals.

bioRxiv · Sep 8, 2017Microbiology